Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq495 161 8e-34 seq8952 143 2e-28 seq7977 109 4e-18 seq1725 98.7 8e-15 seq1076 89.7 4e-12 >seq495 Length=1247913 Score = 161 bits (178), Expect = 8e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | |||||| | ||||| || |||||||| | |||||||| | || || ||| Sbjct 1246351 TTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAAATGAAGGAGACGGCGGAAGCT 1246292 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 ||| | ||||| | || | |||||| || || || || || ||||| |||||||||||| Sbjct 1246291 TTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTCCCCGCATACTTTAATGACTCA 1246232 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||||| ||||| ||||||||| | || |||||||| || |||||||| ||||||||| Sbjct 1246231 CAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATC 1246172 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| || || ||||| |||| ||||| Sbjct 1246171 AACGAACCAACAGCAGCTGCTATTGCTTATGG 1246140 Score = 100 bits (110), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 |||||| ||| ||||| ||| | || |||||||| ||||| ||||||| || Sbjct 1244787 AATTCAGGTTTACGAAGGTGAACGTGCTTTGACTAAAGACAATAACTTGCTTGGTAAATT 1244728 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | || || ||||| ||||||||||| || || |||||||||||||| || || || Sbjct 1244727 CGAGTTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACGTTTGA 1244668 Query 552557 TATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||| || ||||| || ||| ||||||| |||| |||||||| Sbjct 1244667 TATTGACGCCAACGGTATTCTGAATGTTTCTGCCCAGGATAAATC 1244623 Score = 91.5 bits (100), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279 |||| || || |||||||| ||| | || ||||||||||||||||| | | ||| Sbjct 1245172 AGGCCGTGGCGTATGGTGCAGCAGTGCAGGCAGCTATTCTTTCTGGTGATAAGTCGGAAG 1245113 Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339 ||||| || | |||| | || || | || || || |||||| | ||||||| || Sbjct 1245112 CCGTACAAGATTTGTTACTGCTTGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCTG 1245053 Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 | ||| |||||||| || ||| | |||||||| |||||||| Sbjct 1245052 GGGGTGTTATGACTGCACTCATCAAGAGAAATACCACTATTCC 1245010 >seq8952 Length=394 Score = 143 bits (158), Expect = 2e-28 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||| || | |||||| | |||||| | |||||||| | | || || | | Sbjct 279 CACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCAGAAGCATATC 220 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || | ||||| | ||||||| | || ||||| || || |||||||| |||||| Sbjct 219 TAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAATGATGCACAAC 160 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| |||||||| || |||||| || ||||||||| ||||||| ||||||| Sbjct 159 GTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTTAATGTTGTTCGTATCATCAATG 100 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| ||||| || ||||||||||| | ||||| Sbjct 99 AACCTACAGCTGCCGCTATTGCATATGGATTGGATAA 63 >seq7977 Length=351 Score = 109 bits (120), Expect = 4e-18 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 || |||||||| || | ||||||| ||| ||||||||||| ||||| || ||||| Sbjct 283 AGCTGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAAT 224 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGG----AAAC--TGAACATTTAGTTGGTGAT 550135 | | || ||||| || || | ||||| | || | ||| | | | |||||||| Sbjct 223 CGGATCACGCCATCATACGTAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGAT 164 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| |||| || ||||| |||||| ||||||||| ||||||| | Sbjct 163 GCAGCCAAAAATCAGTTAACAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTG 104 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| || | || ||||| ||||| || |||||| || |||||||||||| Sbjct 103 ATTGGCCGAGAGTACAAAGATTCAACTGTACAACAAGATATCAAACATTGGCCTTTC 47 >seq1725 Length=206553 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||||||||| || || || |||||||| || || ||||| | Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 95838 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| |||||||||||| | | || | | || || |||| ||||||||||| | Sbjct 95839 TTTACATTCTCAATTGTATCCGAG-GATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 95897 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| |||||||||||||| Sbjct 95898 AGTTTTGACGAAAATTTGCAT 95918 >seq1076 Length=63818 Score = 89.7 bits (98), Expect = 4e-12 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 || ||||||||||||| ||||| || |||||||| ||| |||| || | | || |||| | Sbjct 32448 GTATTAATCCAGATGAAGCTGTGGCATATGGTGCAGCAGTTCAGGCTGGTGTTATTTCGG 32389 Query 552265 GACAAACTGATGAAA-AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 | ||| |||| ||| | |||||| | | ||||| | |||| || | ||| Sbjct 32388 G------TGAAGAAAGTACT-GGTGACATTGTATTGTTGGATGTGAATCCTTTAACCCTT 32336 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 ||| | |||||| |||| ||| ||||||| || || || | || || ||| ||||||| Sbjct 32335 GGTATTGAAACAATTGGTGGTGTTATGACCAAACTCATTCAAAGGAACACTGTTATTCCT 32276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028458573784150