Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1733 136 3e-27 seq1725 113 4e-20 seq511 102 6e-17 >seq1733 Length=353299 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| || || ||||| ||||| | | || | | || |||| ||| Sbjct 118931 TGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGTGCGACCGTCCTCCAGCTGC 118872 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| ||||| || ||||||||||| || |||||||| ||| Sbjct 118871 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 118812 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||| ||||| | |||||||| || || | ||||| || || Sbjct 118811 GCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTC 118752 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| |||||||| |||||||| Sbjct 118751 AAAGTCTTTACAAAAATCTGCAT 118729 Score = 123 bits (136), Expect = 2e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||| Sbjct 117548 TACCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTATTTTTG 117489 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| || | |||||||||||||||| |||||| || || | Sbjct 117488 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 117429 Query 101448 AAGTTTTTACAAATATCTGCATGGTTAC 101475 ||||| || || || |||||| |||| Sbjct 117428 GTGTTTTCACGAAGATTTGCATGTTTAC 117401 Score = 113 bits (124), Expect = 4e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| || | ||||| ||||| || || || ||||||||||| ||| Sbjct 118233 AAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGA 118174 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| |||| | |||||||| | || ||||| | |||| ||| ||| Sbjct 118173 ATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTG 118114 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||||||||| || |||||| Sbjct 118113 CCCGTCAATGTTTTTACAAAAATTTGCATG 118084 >seq1725 Length=206553 Score = 113 bits (124), Expect = 4e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| ||||| || || ||||| || || ||||||||||| || || ||||| Sbjct 95777 TACCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 95836 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | || | || || || | ||| || ||||| || | |||||| || |||| Sbjct 95837 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 95896 Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472 ||||||| || || || |||||||| Sbjct 95897 AAGTTTTGACGAAAATTTGCATGGT 95921 >seq511 Length=156398 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || |||||||| || ||||| || || |||||||||||||| Sbjct 68722 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 68781 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 |||||| | || | || || |||| ||| || ||||| || | ||| || || ||||| Sbjct 68782 CTTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 68841 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 68842 CGTCTTCACGAATATCTGCAT 68862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396201922603095