Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq495 224 6e-53 seq8952 163 2e-34 seq1733 114 8e-20 seq7977 100 2e-15 >seq495 Length=1247913 Score = 224 bits (248), Expect = 6e-53 Identities = 277/373 (74%), Gaps = 13/373 (3%) Strand=Plus/Minus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| || |||||| || ||||||||||||| ||||||||| | || ||||| ||| Sbjct 1246495 ATTTCAGACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGAT 1246436 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| |||||||| |||||||| | |||| ||||||| ||||| || | | || Sbjct 1246435 ATGAAACATTGGCCATTTAAGGTAGTGAATGCTGGTGGTGGTAAACC-TAAAGTGCAGGT 1246377 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 |||||| | || || || || ||| | || ||| | ||||| || |||||||| Sbjct 1246376 TGAATACAAG--GGCGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTG 1246319 Query 474686 GCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | |||||||| | || ||| |||| | ||| || || | || | ||||| || | Sbjct 1246318 GTTAAAATGAAGGAGACGGCGGAAGCT--TTTCTGGGTCACGCGGTCAAGGATGCTGTTA 1246261 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || || ||||| |||||||| || ||||| ||||| ||||||||| | || || Sbjct 1246260 TTACAGTCCCCGCATACTTTAATGACTCACAACGACAAGCCACTAAAGATTCCGGTGCAA 1246201 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| |||||| |||||||||| || |||||||||||||| || ||||||||| Sbjct 1246200 TTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATG 1246141 Query 474864 GTCTTGATAAGAA 474876 || | || ||||| Sbjct 1246140 GTTTGGACAAGAA 1246128 Score = 96.9 bits (106), Expect = 2e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 290821 TCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAG 290880 ||||| |||||| | | | ||||||||||||||| || ||||| | || |||| || Sbjct 1246134 TCCAA-ACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACATTTAG 1246192 Query 290881 ACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGG 290940 ||| |||||| | |||||| ||| || || ||||| | |||||||| || || || Sbjct 1246193 ACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAGTCATTAAAGTATGCGGG 1246252 Query 290941 GACTGTAATAACAGC 290955 ||||||||||||||| Sbjct 1246253 GACTGTAATAACAGC 1246267 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | || |||||||| |||||| ||||| | || | | || Sbjct 1244774 GAAGGTGAACGTGCTTTGACTAAAGACAATAACTTGCTTGGTAAATTCGAGTTGTCTGGA 1244715 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||| |||||||| | || || || ||||||||||| || ||||||||||| || || Sbjct 1244714 ATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACGTTTGATATTGACGCCAAC 1244655 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 |||||||| |||||| |||| |||||||| Sbjct 1244654 GGTATTCTGAATGTTTCTGCCCAGGATAAATC 1244623 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 ||||||| | ||||||||||| |||||| | ||||| || ||||||| ||||||||| || Sbjct 1246762 AGGTAATCGTACAACACCATCGTATGTTGCATTTACCGATACTGAACGTCTTATTGGCGA 1246703 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCC 474501 ||| || ||| |||||| |||| ||||| Sbjct 1246702 TGCAGCCAAAAATCAAGTTGCAATGAATCC 1246673 >seq8952 Length=394 Score = 163 bits (180), Expect = 2e-34 Identities = 168/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 474657 CACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATC 474716 ||||||| | ||||| |||||||| | | ||||||||| | | ||| |||||| Sbjct 279 CACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCAGAAGCATATC 220 Query 474717 TTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAAC 474776 | ||| | ||||||| ||||||| |||| || || || || ||||||||| | |||| Sbjct 219 TAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAATGATGCACAAC 160 Query 474777 GTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||||||| || |||||||| || | ||||| || ||||||||| | ||||| || |||| Sbjct 159 GTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTTAATGTTGTTCGTATCATCAATG 100 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| ||||| |||| ||||| | |||||||| Sbjct 99 AACCTACAGCTGCCGCTATTGCATATGGATTGGATAAGAA 60 >seq1733 Length=353299 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || || || || || ||| || || ||||||||||| | || Sbjct 118950 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGT 118891 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| || ||||| || || || || ||||| || ||||| || Sbjct 118890 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 118831 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||||| ||||||| ||| |||||||||| | | | ||| | Sbjct 118830 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCA-CTTCGA 118772 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| || | |||||| || ||||| || Sbjct 118771 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 118732 >seq7977 Length=351 Score = 100 bits (110), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| ||| ||||| ||||| ||||| || |||||| | | || |||||||| | Sbjct 264 AAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAATCGGATCACGCCATCATACG 205 Query 474438 TTTCTTTTACTG----AAAC--TGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG 474491 | | || |||| || | ||| | ||||||||| ||||| || ||| |||| Sbjct 204 TAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGATGCAGCCAAAAATCAGTTAA 145 Query 474492 CATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATG 474551 || | ||||| | |||||| ||||||||| |||| | ||||||| || | | | | Sbjct 144 CAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTGATTGGCCGAGAGTACAAAG 85 Query 474552 ATACCACTGTCCAATCTGATATGCGTCATTGGCCTTT 474588 || | ||||| ||| ||||| ||||||||||| Sbjct 84 ATTCAACTGTACAACAAGATATCAAACATTGGCCTTT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267499960018580