Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq495 203 4e-47 seq1733 170 3e-37 seq511 123 3e-23 seq8952 122 1e-22 seq1725 104 3e-17 seq1076 91.5 2e-13 >seq495 Length=1247913 Score = 203 bits (224), Expect = 4e-47 Identities = 262/362 (72%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 195488 GACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAG 195547 ||||| || || || |||||||| |||||| ||| ||| ||| ||||| || Sbjct 1246489 GACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGATATGAAA 1246430 Query 195548 GACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTT 195607 | ||| | | | | || || | || | || ||| |||| | | ||||||| Sbjct 1246429 CATTGGCCATTTAAGGTAGTGAATGCTGGTGGTGGTAAACCTAAAGTGCAGGTTGAATAC 1246370 Query 195608 CACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATG 195667 | || |||| ||| ||| |||| ||||| |||||||| ||||| ||| |||| ||| Sbjct 1246369 AAGGGCGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAAATG 1246310 Query 195668 AAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCT 195727 |||||||| |||||| |||| ||||| | | || || ||||| ||| | || || || Sbjct 1246309 AAGGAGACGGCGGAAGCTTTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTCCCC 1246250 Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 || ||||| | ||| ||||||||||| || || || || | | ||| ||||| |||||| Sbjct 1246249 GCATACTTTAATGACTCACAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGTCTA 1246190 Query 195788 AACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAG 195847 || ||| | |||||||| ||||||||||| ||||| |||||||||||| |||||||| Sbjct 1246189 AATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGGTTTGGACAAG 1246130 Query 195848 AA 195849 || Sbjct 1246129 AA 1246128 Score = 129 bits (142), Expect = 8e-25 Identities = 182/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 || |||||||| ||||| || |||||||| ||||| || | ||| |||||||| || ||| Sbjct 1245552 GAAATTGATTCATTGTTCGAGGGAATTGATTTCTACACCAATATCACCCGTGCTCGCTTT 1245493 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || || ||| ||||| | || | |||||| || ||||| ||| ||| ||| Sbjct 1245492 GAGGAATTATGTGCTGATCTTTTCCGTTCAACTATGGATCCGGTTGAGAAAGCACTCCGT 1245433 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 || || |||||||| ||| | | || |||| ||||| || || || |||||||||||| Sbjct 1245432 GATGCTAAGATGGACAAGGCCCAAGTCCATGACATTGTACTAGTAGGTGGATCAACCCGT 1245373 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 |||||||| | || || | || || ||||| | ||||| | || |||| Sbjct 1245372 ATTCCGAAAGTGCAGAAGCTCCTATCGGATTTCTTTTCTGGCAAAGAACTGAATAAAAGC 1245313 Query 196373 ATCAACCCGGATGAAG 196388 ||||| || || |||| Sbjct 1245312 ATCAATCCAGACGAAG 1245297 Score = 107 bits (118), Expect = 3e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||||||||| ||||||||||| |||||||| || |||| | ||||| | |||||| Sbjct 1246025 ATCTTTGATCTTGGTGGTGGTACATTTGATGTATCTATTCTAACCATTGAGGATGGTATT 1245966 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 |||||||| ||| |||| ||||| ||||||||||| || ||| Sbjct 1245965 TTCGAAGTCAAGTCTACAGCTGGGGATACTCATCTCGGAGGT 1245924 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 196384 TGAAG-CAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATA 196442 ||||| | || || |||||||| || || ||||| |||||||| || |||| | | Sbjct 1245175 TGAAGGCCGTGGCGTATGGTGCAGCAGTGCAGGCAGCTATTCTTTCTGGTGATAAGTCGG 1245116 Query 196443 ATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAG 196502 | ||| |||||| | | || ||||| || ||||| | || || ||| ||||||||| Sbjct 1245115 AAGCCGTACAAGATTTGTTACTGCTTGACGTCGCACCGCTTTCACTTGGTATTGAAACAG 1245056 Query 196503 CGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAAC 196562 | || |||||||||||| | | || | || || || |||||||| || || | | Sbjct 1245055 CTGGGGGTGTTATGACTGCACTCATCAAGAGAAATACCACTATTCCCACGAAAACCTCCC 1244996 Query 196563 AAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 || || | || || ||||| || || || ||||| | |||||| || Sbjct 1244995 AAACTTTCACCACATACTCCGACAACCAGCCTGGTGTCCTTATTCAGGT 1244947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 ||| | ||||| || || ||||| ||||| | | || | || || || | | ||||| Sbjct 1244792 GTTGAAATTCAGGTTTACGAAGGTGAACG-TGCTTTGACTAAAGACAATAACTTGCTTGG 1244734 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | ||||| ||| | || ||||| |||| || | ||||| || || ||| | || Sbjct 1244733 TAAATTCGAGTTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCAC 1244674 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 || ||||| ||||| || || ||||| || || | || |||| || | | ||||| Sbjct 1244673 GTTTGATATTGACGCCAACGGTATTCTGAATGTTTCTGCCCAGGATAAATCCACAGGCAA 1244614 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | | || ||| ||||||||||| || || || | || ||||| || || || || Sbjct 1244613 ACAAAACAAAATTACCATTACCAATGATAAAGGACGTTTGTCAAAGGATGAGATCGAGCG 1244554 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGG 196865 ||||| || || || ||||| |||| || Sbjct 1244553 GATGGTACAGGAAGCCGAAAAATACAAGG 1244525 >seq1733 Length=353299 Score = 170 bits (188), Expect = 3e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || || | || || ||||| || || ||||| || ||| | || Sbjct 118729 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 118788 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || ||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 118789 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 118848 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || ||||| || || ||||| || || || || || | ||||||| || Sbjct 118849 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAAT 118908 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| ||||| || || || ||||| ||||| | ||||| ||||| Sbjct 118909 ATTCAGAAGGAATCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGG 118955 Score = 132 bits (146), Expect = 6e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| | || || || || |||||| | || |||||| | || Sbjct 118085 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 118144 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| || | || ||||||||||| ||||| ||||| || || || |||||| Sbjct 118145 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAG 118204 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 || || ||||||||||||||||| || Sbjct 118205 CAGCGCCTTATTTTTGCTGGTAAGCA 118230 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| |||||||| || ||||||||||| ||||| || || || ||| | ||| Sbjct 117407 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 117466 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | ||||| || || ||||| || || || ||||| || || ||| Sbjct 117467 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAAGAGGGTATTCCGCCAGACCAG 117526 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||| ||||| |||| Sbjct 117527 CAGCGCCTTATATTTGCAGGTA 117548 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| ||||| ||||| || ||||| ||||| | || || || Sbjct 117734 GTGGTATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAG 117793 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | || || || || || || ||||| || |||||||| | Sbjct 117794 CATCTGACACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAG 117853 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 | ||||| ||| | || || || |||| Sbjct 117854 ACCAGCAGCGATTGATCTTCGCGGGTA 117880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 171988 CTTAT-TTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA 172046 ||||| |||||| |||||||| | |||||||| |||||| | ||||||| || | || Sbjct 117982 CTTATGTTTTGCAGGTAAACAATTGGAAGATGGTCGTACCTTGTCTGATTATAATATCCA 118041 Query 172047 AAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 |||||||||||| || |||||||| || | || || ||||| ||||| Sbjct 118042 AAAGGAGTCTACACTTCACCTTGTACTTCGCCTCCGAGGTGGCATGCAA 118090 >seq511 Length=156398 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || | |||||||| || || ||||| ||||| || ||||| Sbjct 68862 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 68803 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || || |||||||||||||| || |||||||| ||||| Sbjct 68802 GATACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 68743 Query 171982 CAACGACTTATTTTTGCTGGT 172002 ||||||||||||||||| ||| Sbjct 68742 CAACGACTTATTTTTGCAGGT 68722 >seq8952 Length=394 Score = 122 bits (134), Expect = 1e-22 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 ||| |||| || || || || || ||||| | ||||| | || |||||||||| Sbjct 292 GAAAAAACC-TTCGCACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGAT 234 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 || ||| | | | || || || ||| |||||||||| || |||||||||||||| Sbjct 233 CGCAGAAGCATATCTAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTT 174 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 | |||| ||||||| || || || || || || | | ||||||| || || || | | Sbjct 173 TAATGATGCACAACGTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTTAATGTTGT 114 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | | || ||||||||||| ||||| || || ||||| ||||| |||| ||||| Sbjct 113 TCGTATCATCAATGAACCTACAGCTGCCGCTATTGCATATGGATTGGATAAGAA 60 >seq1725 Length=206553 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| | ||||| ||||| || || || ||||| || || || Sbjct 95918 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 95859 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||||| || || || || || |||||||| || || |||||| Sbjct 95858 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 95799 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | |||||||| |||| Sbjct 95798 CAACGGTTGATTTTTGCAGGTA 95777 >seq1076 Length=63818 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 195878 TTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTC 195937 || ||||| ||||||||||| |||||||| || | | | ||||| |||| | ||| Sbjct 33289 TTCGATCTTGGTGGTGGTACATTTGATGTGTCGATGTTGACAATTGATAATGGTGTTTTC 33230 Query 195938 GAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| ||||||| ||||||||||||| | |||||||||||||| || Sbjct 33229 GAAGTGTTGGCTACTAATGGTGATACTCATTTGGGTGGTGAAGATTTTGA 33180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657732184361200