Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1733 109 1e-18 seq511 96.9 6e-15 >seq1733 Length=353299 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 ||| || || || |||||||| | | ||| ||||| ||||| || ||||||||||| || Sbjct 118234 TAAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTG 118175 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || |||| |||| |||| || || || |||| ||||||||||| || || || || Sbjct 118174 AATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTT 118115 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||||||||| |||||||| Sbjct 118114 GCCCGTCAATGTTTTTACAAAAATTTGCAT 118085 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || | | ||| || || || || || || ||||| ||||||||||| | | Sbjct 117546 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTATTTTTGCT 117487 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| ||| ||||| ||||| || ||||| || || || Sbjct 117486 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 117427 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||| || || |||||||| || Sbjct 117426 GTTTTCACGAAGATTTGCATGTT 117404 >seq511 Length=156398 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | || ||||||||||| || || || || |||||||| ||||| | Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| ||| |||||||| || || || || || || || || || || |||| | Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| || Sbjct 68843 GTCTTCACGAATATCTGCATCTT 68865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899476324657200