Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1733 107 3e-18 seq1725 98.7 1e-15 >seq1733 Length=353299 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || ||||| || ||| | ||||| || | ||| Sbjct 118728 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 118787 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || ||| || || ||||| || |||||||| || ||||| || Sbjct 118788 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 118847 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || |||||||| || || | || || || |||||||| Sbjct 118848 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAA 118907 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| || || ||||||| || Sbjct 118908 TATTCAGAAGGAATCGACGCTGCA 118931 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || || || || || |||||||| || | |||| Sbjct 118085 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 118144 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || || || || ||||||||||| || ||||| || || Sbjct 118145 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAG 118204 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 || | | |||| ||| |||||||| Sbjct 118205 CAGCGCCTTATTTTTGCTGGTAAGCA 118230 >seq1725 Length=206553 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| || ||||| ||||| ||||| | || |||||| || Sbjct 95918 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 95859 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| |||||||| || |||||||||||||| ||||| || Sbjct 95858 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 95799 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| | ||||||| ||| |||| Sbjct 95798 CAACGGTTGATTTTTGCAGGTA 95777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731727135086000