Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1733 123 5e-23 seq511 111 3e-19 seq1725 104 5e-17 >seq1733 Length=353299 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| ||||| || | || |||| || || || |||||||| | || | Sbjct 118910 ATATTATAATCAGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGC 118851 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || ||||| || ||||| || || ||| ||||| |||| | Sbjct 118850 TGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTA 118791 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || ||||| || || ||||||||||| || || || || | ||| |||||| Sbjct 118790 TCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGC 118731 Query 192535 ATT 192537 ||| Sbjct 118730 ATT 118728 >seq511 Length=156398 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| ||||| || | || |||||||||||||| || || || |||||||| |||||| Sbjct 68722 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 68781 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 |||||||| || | ||| ||||||||||| || || ||||| || || |||||||| Sbjct 68782 CTTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 68841 Query 192516 TGTTTTAATAAATATCTGCATTTT 192539 || || | ||||||||||| || Sbjct 68842 CGTCTTCACGAATATCTGCATCTT 68865 >seq1725 Length=206553 Score = 104 bits (114), Expect = 5e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| ||||| || || | || ||||| || ||||| |||||||| || |||||||| Sbjct 95777 TACCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 95836 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||||||||| || | ||| || ||||| || || || ||||| ||||||||||||| Sbjct 95837 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 95896 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | || || ||||| Sbjct 95897 AAGTTTTGACGAAAATTTGCAT 95918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984280262852250