Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq511 120 5e-22 seq1725 113 8e-20 seq1733 107 3e-18 >seq511 Length=156398 Score = 120 bits (132), Expect = 5e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| |||||||| | || ||||| |||||||| || || || |||||||| |||||| Sbjct 68722 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 68781 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 |||||||| || ||||| ||||||||||| || || ||||| || || |||||||| Sbjct 68782 CTTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 68841 Query 172049 TGTTTTAATGAATATCTGCAtttt 172072 || || | |||||||||||| || Sbjct 68842 CGTCTTCACGAATATCTGCATCTT 68865 >seq1725 Length=206553 Score = 113 bits (124), Expect = 8e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| || | || || || || ||||| |||||||| || |||||||| Sbjct 95777 TACCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 95836 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || ||||| || ||||| || || || ||||| ||||||||||||| Sbjct 95837 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 95896 Query 172048 ATGTTTTAATGAATATCTGCAt 172069 | ||||| | ||| || ||||| Sbjct 95897 AAGTTTTGACGAAAATTTGCAT 95918 >seq1733 Length=353299 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || || | || |||| |||| || || || ||||| || | || Sbjct 118911 AATATTATAATCAGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCG 118852 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || ||||| || ||||| || || ||| ||||| ||||| Sbjct 118851 CTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGT 118792 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| || || ||||||||||| || || || || | || ||||| Sbjct 118791 ATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 118732 Query 172067 CAtt 172070 |||| Sbjct 118731 CATT 118728 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||| || | | ||| ||||| || || || || ||||| ||||||||||| Sbjct 117548 TACCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTATTTTTG 117489 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | || ||||| ||||| || ||||| ||||| | Sbjct 117488 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 117429 Query 172048 ATGTTTTAATGAATATCTGCAtttt 172072 |||||| | ||| || ||||| || Sbjct 117428 GTGTTTTCACGAAGATTTGCATGTT 117404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904956839643000