Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1733 140 3e-28 seq1725 100 3e-16 >seq1733 Length=353299 Score = 140 bits (154), Expect = 3e-28 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || |||||||| || || | Sbjct 118729 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 118788 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||| |||||||| ||||| || || || ||||| Sbjct 118789 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 118848 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTAT 24880 || || |||||||||| || || ||||||||||| ||| ||| |||| |||||| Sbjct 118849 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCG---CACATTGTCTGATTAT 118905 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||||||||| || ||| |||| Sbjct 118906 AATATTCAGAAGGAATCGACGCTGCACCTGGT 118937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || ||||||||||| || || | ||||| ||||| | Sbjct 117739 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 117798 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| ||||| ||||| ||||| || ||||| || || || || Sbjct 117799 GACACCATCGAGAATGTTAAGGCAAAA-ATCCAGGACAAGGAGGGAATTCCACCAGACCA 117857 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 117858 GCAGCGATTGATCTTCGCGGG 117878 >seq1725 Length=206553 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || | ||||| |||| |||||||| |||||||| || || ||| || Sbjct 95921 ACCATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCC 95862 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | |||||| || || || ||||||||||| ||||| || ||| Sbjct 95861 TCGGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGAT 95802 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || ||||| ||||| ||||| || Sbjct 95801 CAGCAACGGTTGATTTTTGCAGG 95779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449808548393800