Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq511 113 7e-20 seq1725 96.9 5e-15 seq1733 87.8 3e-12 >seq511 Length=156398 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | || || ||||| ||||| || ||||| |||| |||||| || Sbjct 68861 TGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCCG 68802 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| |||||| ||| ||| || || |||||||| ||||||| Sbjct 68801 ATACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAAC 68742 Query 146152 AAAGACTCATTTTTGCAGGT 146171 || |||| |||||||||||| Sbjct 68741 AACGACTTATTTTTGCAGGT 68722 >seq1725 Length=206553 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || ||||| ||||| |||| || ||| | Sbjct 95917 TGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCGG 95858 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||||||| |||||||| ||||||||||| || || ||||| | Sbjct 95857 ATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAGC 95798 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | | ||||||||||||| Sbjct 95797 AACGGTTGATTTTTGCAGGTA 95777 >seq1733 Length=353299 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || || || || ||||| || || | || || || | | Sbjct 118730 TGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCTG 118789 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| || || ||| || |||||||||||||| ||||| | Sbjct 118790 ATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAGC 118849 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || ||||| || || || | || || | | || || | |||||||||| Sbjct 118850 AGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAATA 118909 Query 146212 TACAAAAAGAATCGAC 146227 | || || |||||||| Sbjct 118910 TTCAGAAGGAATCGAC 118925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786010788188200