Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1733 111 1e-19 seq511 86.0 5e-12 >seq1733 Length=353299 Score = 111 bits (122), Expect = 1e-19 Identities = 114/148 (77%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| |||| | | ||||| || ||||||||||||||||||||||||| |||| | Sbjct 117546 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTATTTTTGCT 117487 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | ||||| ||| || ||||||||||| || ||||| ||||| | Sbjct 117486 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 117427 Query 29767 GTTTTAACAAATATCTGCAT-TTTAAAA 29793 ||||| || || || ||||| |||| || Sbjct 117426 GTTTTCACGAAGATTTGCATGTTTACAA 117399 >seq511 Length=156398 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 || ||| | || | || ||| ||||| || ||||||||||| || ||||| |||||| | Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTG-AATTTTAGC 68781 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| | || | || || || |||||| ||||| || || || || |||||||| Sbjct 68782 CTTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 68841 Query 29766 GGTTTTAACAAATATCTGCATTTT 29789 || || || ||||||||||| || Sbjct 68842 CGTCTTCACGAATATCTGCATCTT 68865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385144856907735