Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq495 170 1e-36 seq8952 145 6e-29 seq7977 107 1e-17 seq1079 87.8 1e-11 >seq495 Length=1247913 Score = 170 bits (188), Expect = 1e-36 Identities = 259/368 (70%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| |||||| || |||||||| || ||||| | | |||| Sbjct 1246128 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 1246187 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || | ||||||||||||||||| |||||| || ||||| ||| Sbjct 1246188 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAGTCATTAAAGTAT 1246247 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || |||||||| ||||| | || | | || | | |||| || || | Sbjct 1246248 GCGGGGACTGTAATAACAGCATCCTTGACCGCGTGACCCAGAAAAGCTTCCGCCGTCTCC 1246307 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||||||| |||| ||| || ||||| | |||||||| | | ||| | || Sbjct 1246308 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAAGTCTTCGTCTCGCCC 1246367 Query 282572 TGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAA 282628 | ||| || | | | ||||| | |||| |||| | || |||||||||||| Sbjct 1246368 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACCTTAAATGGCCAA 1246427 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688 | ||||||||| ||||| || | |||| ||| | | |||||| | |||||| || Sbjct 1246428 TGTTTCATATCCGATTGCACTGATCCATCATCAAACTTACGACCAATCAGTCGTTTAGCG 1246487 Query 282689 TCAAAAAT 282696 || |||| Sbjct 1246488 TCTGAAAT 1246495 Score = 113 bits (124), Expect = 3e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 1244550 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 1244609 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 |||| ||| |||||||| ||||| ||||| |||||||| ||||| || | ||| Sbjct 1244610 TTGTTTGCCTGTGGATTTATCCTGGGCAGAAACATTCAGAATACCGTTGGCGTCAATATC 1244669 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 1244670 AAACGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 1244729 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 281570 | | || || ||||| |||||||| || |||||||| ||| ||| Sbjct 1244730 TTTACCAAGCAAGTTATTGTCTTTAGTCAAAGCACGTTCACCTTCGTAAA 1244779 Score = 104 bits (114), Expect = 2e-16 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 |||| ||| ||| ||||| | |||| |||||| |||||||||||| ||||| ||| || Sbjct 1246658 AAAACAGTGTTGTGCGGATTCATTGCAACTTGATTTTTGGCTGCATCGCCAATAAGACGT 1246717 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || || || ||||||| |||||| ||||| ||||| ||||||||| Sbjct 1246718 TCAGTATCGGTAAATGCAACATACGATGGTGTTGTACGATTACCT 1246762 >seq8952 Length=394 Score = 145 bits (160), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| | ||||| |||| ||| ||||| || |||||||| || || Sbjct 51 TTGCCTTCCTTCTTATCCAATCCATATGCAATAGCGGCAGCTGTAGGTTCATTGATGATA 110 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | ||||||||| || ||||| | ||||||||||| || ||||| | ||||| ||| Sbjct 111 CGAACAACATTAAGGCCGGCAATAGTACCTGCATCTTTGGTAGCTTGACGTTGTGCATCA 170 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || |||| ||| |||| | ||||||| ||||| | ||| || | Sbjct 171 TTAAAGTAAGCAGGTACCGTAACAACTGCATGTTTTACTTCCTTTCCTAGATATGCTTCT 230 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 || | | |||||||| | | || ||||| |||||| Sbjct 231 GCGATCTCCTTCATTTTGCCAAGAACCATTGCTGAAAT 268 >seq7977 Length=351 Score = 107 bits (118), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||||| ||| |||||| ||| ||| || || || | |||| ||||| | Sbjct 48 AAAGGCCAATGTTTGATATCTTGTTGTACAGTTGAATCTTTGTACTCTCGGCCAATCAGA 107 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 ||||| ||||||||| |||||| ||||| || |||| |||||||||||| Sbjct 108 CGTTTAACATCAAAAACAGTATTTTCCGGATTTGTTGTTAACTGATTTTTGGCTGCATCA 167 Query 282740 CCAATCAGATGTT-----CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||| ||| | | || || | || |||| || |||||||| || | |||||| Sbjct 168 CCAATAAGACGCTCACCGCTTTCACCAGTGAATGCTACGTATGATGGCGTGATCCGATTA 227 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || || ||||| ||||||||||| ||| ||||||| | || || ||||| || Sbjct 228 CCCTGTTCATTTGCAATAATTTCCACTCGTCCATTTTTATAGACTCCAACACAGCT 283 >seq1079 Length=37891 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 917175 TTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 917234 |||||||| |||||| |||||||||||||| | |||||| ||||||||| | | | | Sbjct 25124 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 25183 Query 917235 TCCTAATGTTTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGG 917282 || | ||||| |||| ||||| ||||| |||||||||||||| Sbjct 25184 ACCACAGATTTTCGAACTCATTGCTGAACATTCGATATGCCAACCAGG 25231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739852968418710