Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1733 192 1e-43 seq511 122 2e-22 >seq1733 Length=353299 Score = 192 bits (212), Expect = 1e-43 Identities = 172/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | |||||| || ||||| ||||| |||||||||||||| | | | |||| Sbjct 118943 CGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGTGCGACCG 118884 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| |||| || |||||||| || || |||||||| Sbjct 118883 TCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 118824 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||||||||| |||||||| || |||||| || || ||||| | ||||| Sbjct 118823 TCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATG 118764 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||||||||| ||||||||| Sbjct 118763 GTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || || | || ||||| ||||| || ||||| ||||| |||||| Sbjct 118230 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATC 118171 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||||| || || ||| || || ||||| || || ||||||||||| Sbjct 118170 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 118111 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || ||||| Sbjct 118110 GTCAATGTTTTTACAAAAATTTGCAT 118085 >seq511 Length=156398 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| ||||||||| || || || || |||||||||||||| || || Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| ||||| ||||| | |||||| || | || |||||||| || || ||| Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 68843 GTCTTCACGAATATCTGCAT 68862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981628001068065