Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1733 87.8 1e-12 seq1725 86.0 4e-12 >seq1733 Length=353299 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || || ||||| || | |||||| |||| |||| || || || ||||| Sbjct 118919 TCCTTCTGAATATTATAATCAGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 118860 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||||||| | || | ||||| ||||| ||| || || || |||| Sbjct 118859 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTT-TGCTTTGACATT 118801 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | ||||| || | || || |||||||| || || || ||||| Sbjct 118800 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 118741 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 118740 AAAAATCTGCAT 118729 >seq1725 Length=206553 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||||||||| || ||||||||| | || | ||||||||||| |||||| | Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 95838 Query 33670 TTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| || || ||||| || |||| ||| ||||||||||| ||||| Sbjct 95839 TTTA-CATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 95897 Query 33729 CGTTTTTACAAAGATCTGCATAGT 33752 ||||| || || || ||||| || Sbjct 95898 AGTTTTGACGAAAATTTGCATGGT 95921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328640563723200