Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq961 91.5 1e-13 seq873 87.8 1e-12 >seq961 Length=383894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 43894 TTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953 || ||| | ||| || | || ||||||||| ||||||||||||| | ||| || || || Sbjct 143655 TTAGGTAAATCGTTTCTCACAGGAAGTTCAAGTACCAGAAGCACGGTTTTTCTACGGTTT 143714 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||||| || |||||||||||||| ||||||||| |||| |||||||| || Sbjct 143715 TCAAATTATGATCGAAAATATTCATTCTGAAATGTACTCCAAAATGATTGATACGTATAT 143774 >seq873 Length=401980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 19614 AGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAA 19673 ||| ||||| || || || ||||| || | | ||| | || |||||| | || || || Sbjct 268262 AGTTCATGATACGGTGGTTAATCAGCTGTTAGCCAAAATGGATGGTGTTGATCAGCTCAA 268203 Query 19674 TAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACG 19733 ||| ||| | || ||||| ||||| || || || | || || || |||||||| Sbjct 268202 TAACATTCTTGTAATTGGTATGACAAACAGGAAAGATATGATCGATGAAGCATTATTACG 268143 Query 19734 ACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGA 19793 ||| ||||| |||| || | || |||||| ||||| |||||| ||| ||| | | Sbjct 268142 ACCAGGTCGAATGGAGGTACAAATGGAAATTTCGTTACCTGATGAAGCTGGTCGTTTACA 268083 Query 19794 AATTTTAAACATACATAC 19811 |||||| || || || || Sbjct 268082 AATTTTGAAAATTCACAC 268065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397379295339175