Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1733 168 2e-36 seq625 154 4e-32 seq8952 147 7e-30 seq495 147 7e-30 seq511 122 3e-22 seq1725 113 1e-19 seq7977 109 2e-18 seq1076 89.7 2e-12 >seq1733 Length=353299 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || || || || || || || ||||||||||||||||| Sbjct 118955 CCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGAC 118896 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 ||||| || || || || || || || || |||||||| || || |||||||| || ||| Sbjct 118895 AATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 118836 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || ||||| || ||||| ||||| || || | |||||| | || ||| Sbjct 118835 ATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACT 118776 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | || || || || | || |||||||||||||||||| Sbjct 118775 TCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 123 bits (136), Expect = 8e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || || || |||||||| ||||| || ||||||||||||||||| Sbjct 118230 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATC 118171 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || |||||||| || || | ||||| | |||||||| | || | ||||| || Sbjct 118170 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 118111 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||||||||||||||| ||||| Sbjct 118110 GTCAATGTTTTTACAAAAATTTGCAT 118085 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | || ||||| ||||| |||||||| ||||| ||||||| Sbjct 118091 TTTGCATGCCACCTCGGAGGCGAAGTACAAGGTGAAGTGTAGACTCCTTTTGGATATTAT 118032 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||||||| || || || |||||||| | |||||| || ||||| Sbjct 118031 AATCAGACAAGGTACGACCATCTTCCAATTGTTTACCTGCAAA 117989 >seq625 Length=428693 Score = 154 bits (170), Expect = 4e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 130740 CCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTTCGCAATATCCCCGGGAGAT 130799 ||||||| ||| ||||||||||||||||| |||||||||||||||| |||||| ||| | Sbjct 245978 CCTCCAATCATCACAAAATCAGCTCCTGCACCAAATGCTTTCGCAACATCCCCAGGATTT 246037 Query 130800 TTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATGTGCCGCATCAGCACACTCT 130859 | || || ||||| | ||||| || || || |||||||| ||||||||||| || Sbjct 246038 GTGCATCCTCCATCGCTCACCACATGCCCGTTCAAACCATGTGCAGCATCAGCACATTCC 246097 Query 130860 GAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTTTCTTGTAGTACAAACAGCA 130919 ||| ||| | ||||||||| |||||||||||| || | ||| |||||||| | | Sbjct 246098 AAAACAGCGCTCAATTGTGGATACCCAACTCCAGTTTTCTTACGTGTCGTACAAACTGAA 246157 Query 130920 CCTGGACC 130927 || ||||| Sbjct 246158 CCAGGACC 246165 >seq8952 Length=394 Score = 147 bits (162), Expect = 7e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 ||| || || |||||| |||||||| | | ||||||||||| || || ||||||||| | Sbjct 278 ACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCAGAAGCATATCT 219 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||| | ||||| |||| ||| |||| ||||| || || ||||||||||| || || Sbjct 218 AGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAATGATGCACAACG 159 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | || || |||||||| || | ||||| || | |||||| | | || || ||||| Sbjct 158 TCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTTAATGTTGTTCGTATCATCAATGA 99 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||| || ||||| || ||||||||||| | ||||| Sbjct 98 ACCTACAGCTGCCGCTATTGCATATGGATTGGATAA 63 >seq495 Length=1247913 Score = 147 bits (162), Expect = 7e-30 Identities = 246/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 349388 GATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAA 349447 || ||||| ||||| |||||| | | ||| ||| ||| ||||| ||| | ||| Sbjct 1246489 GACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGATATGAAA 1246430 Query 349448 CATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATAT 349507 |||| || |||| || || | |||| |||||| | | |||||||||| Sbjct 1246429 CATTGGCCATTTAAGGTAGTGAATGCTGGTGGTGGTAAACCTAAAGTGCAGGTTGAATAC 1246370 Query 349508 AAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 || || || || || || |||||| | ||||| ||||| || |||||||| |||||| Sbjct 1246369 AAGGGCGAGACGAAGAC---TTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAA 1246313 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||| | || ||||| | | | ||| | | || | |||||||||||||| || Sbjct 1246312 ATGAAGGAGACGGCGGAAGCTTTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTC 1246253 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || |||||||| | || || || || |||||| | || ||||| || Sbjct 1246252 CCCGCATACTTTAATGACTCACAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGT 1246193 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||||||||||| | || || || ||||| || || || || ||||| ||||| Sbjct 1246192 CTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGG 1246140 Score = 113 bits (124), Expect = 1e-19 Identities = 183/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 350029 TATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 ||| ||||||||||| ||| | || || | ||||||| | ||| || ||||||| Sbjct 1245556 TATCGAAATTGATTCA-TTGTTCGAGGGAATTGATTTCTACACCAATATCACCCGTGCTC 1245498 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | ||||| ||||||||| |||||||| | |||| |||||||| || || |||| | Sbjct 1245497 GCTTTGAGGAATTATGTGCTGATCTTTTCCGTTCAACTATGGATCCGGTTGAGAAAGCAC 1245438 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| || ||| ||| || | |||| | || |||| ||||| || | Sbjct 1245437 TCCGTGATGCTAAGATGGACAAGGCCCAAGTCCATGACATTGTACTAGTAGGTGGATCAA 1245378 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | |||||||| ||||| || || | ||||| || || ||| ||||||||||| || Sbjct 1245377 CCCGTATTCCGAAAGTGCAGAAGCTCCTATCGGATTTCTTTTCTGGCAAAGAACTGAATA 1245318 Query 350268 GATCAATTAATCCAGATGAAG 350288 | || |||||||| |||| Sbjct 1245317 AAAGCATCAATCCAGACGAAG 1245297 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| |||||| | ||||||||||| ||||||||||| | ||||| |||| || | Sbjct 1246030 TTCTTATCTTTGATCTTGGTGGTGGTACATTTGATGTATCTATTCTAACCATTGAGGATG 1245971 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 | ||||| ||||| || | || ||||| ||||| ||||| || || Sbjct 1245970 GTATTTTCGAAGTCAAGTCTACAGCTGGGGATACTCATCTCGGAGG 1245925 Score = 89.7 bits (98), Expect = 2e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 183692 ACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATT 183751 ||| || | ||| ||||| ||||| |||| || ||||| || || || || ||||| | Sbjct 1245924 ACCTCCGAGATGAGTATCCCCAGCTGTAGACTTGACTTCGAAAATACCATCCTCAATGGT 1245983 Query 183752 TAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || ||| ||||||||||||||||||||||| | |||||| Sbjct 1245984 TAGAATAGATACATCAAATGTACCACCACCAAGATCAAA 1246022 >seq511 Length=156398 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || || ||||| |||||||| ||||| || || ||||| ||||||||||| Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || | ||| || ||||| |||| |||||||| |||| Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 68843 GTCTTCACGAATATCTGCAT 68862 >seq1725 Length=206553 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | ||||||||||| || || || |||||||| ||||| ||||| ||| Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 95838 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || | ||| || ||||| |||| || || || |||| Sbjct 95839 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 95898 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||| ||||| Sbjct 95899 GTTTTGACGAAAATTTGCAT 95918 >seq7977 Length=351 Score = 109 bits (120), Expect = 2e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 ||||||| || | |||||| || || ||||| ||||||||||| || ||||| | Sbjct 280 TGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAATCGG 221 Query 349292 ACAACGCCATCATACGTTGCATTTAC---CGAAA---CTGAGCGTATGATTGGTGATTCT 349345 | |||||||||||||| ||||| || |||| ||||||| | ||||||||| | Sbjct 220 ATCACGCCATCATACGTAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGATGCA 161 Query 349346 GCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATT 349405 || |||||||| | | ||||| ||||||| |||||||||| ||| || || ||| Sbjct 160 GCCAAAAATCAGTTAACAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTGATT 101 Query 349406 GG 349407 || Sbjct 100 GG 99 >seq1076 Length=63818 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 349766 AATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||||||||| |||| ||| | ||||||||||| |||||||| || | | ||| |||| Sbjct 33301 AATATTCTTGTTTTCGATCTTGGTGGTGGTACATTTGATGTGTCGATGTTGACAATTGAT 33242 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 | || |||| ||||| || ||| ||||||||| ||| | ||||| ||||||||| Sbjct 33241 AATGGTGTTTTCGAAGTGTTGGCTACTAATGGTGATACTCATTTGGGTGGTGAAGATTTT 33182 Query 349886 GA 349887 || Sbjct 33181 GA 33180 Score = 87.8 bits (96), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 ||||||||||||||||| ||||| ||||| ||| |||||| ||||| || | || Sbjct 33180 TCAAAATCTTCACCACCCAAATGAGTATCACCATTAGTAGCCAACACTTCGAAAACACCA 33239 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 | ||||| | || || || |||||||||||||||||||| | ||| ||| Sbjct 33240 TTATCAATTGTCAACATCGACACATCAAATGTACCACCACCAAGATCGAAA 33290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514946976190505