Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3622 82.4 6e-11 seq219 82.4 6e-11 >seq3622 Length=226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||||||| | || ||||| ||||| | |||||||||| |||| ||| || Sbjct 119 ATCCCAAATCCTGACACCTTTCTCAGATAAATGCTTTGCATTTGTATCGCCTCGAATGAA 60 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGT 112277 |||||||| |||||| ||||| ||||||||||| |||| ||| || || Sbjct 59 CCATAGCAGTTCTTCAACAACGCCTTTCCAGTAGACTCGTTTGGTTGT 12 >seq219 Length=241172 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||||||| | || ||||| ||||| | |||||||||| |||| ||| || Sbjct 18199 ATCCCAAATCCTGACACCTTTCTCAGATAAATGCTTTGCATTTGTATCGCCTCGAATGAA 18258 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGT 112277 |||||||| |||||| ||||| ||||||||||| |||| ||| || || Sbjct 18259 CCATAGCAGTTCTTCAACAACGCCTTTCCAGTAGACTCGTTTGGTTGT 18306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||||||| | || ||||| ||||| | |||||||||| |||| ||| || Sbjct 20922 ATCCCAAATCCTGACACCTTTCTCAGATAAATGCTTTGCATTTGTATCGCCTCGAATGAA 20981 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGT 112277 |||||||| |||||| ||||| ||||||||||| |||| ||| || || Sbjct 20982 CCATAGCAGTTCTTCAACAACGCCTTTCCAGTAGACTCGTTTGGTTGT 21029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391869958786105