Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1733 145 2e-29 seq511 87.8 4e-12 >seq1733 Length=353299 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || || || || || || |||||||| | | || Sbjct 118950 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGT 118891 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||||||||||||| || ||||| || || || || || || |||| || Sbjct 118890 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 118831 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || |||||| ||| || |||||||| || ||||| || || ||||| Sbjct 118830 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAG 118771 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| | |||||||||||| | ||||||| Sbjct 118770 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || || |||||||| || || || ||||| | ||||| || ||||| ||| Sbjct 118230 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATC 118171 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || |||||||| |||||||| ||||| || | ||||||||||| ||| Sbjct 118170 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 118111 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | || |||||||| | ||||| Sbjct 118110 GTCAATGTTTTTACAAAAATTTGCAT 118085 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || || ||||| || |||| ||| |||||||||||||| ||| Sbjct 117878 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 117819 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||||| ||| || || | ||||| || || || || ||| Sbjct 117818 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 117759 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || ||||| | ||||| Sbjct 117758 GTTTTAACAAAGATTTGCAT 117739 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || |||||||| || ||||| || |||| || || ||||| || || ||| | Sbjct 117546 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTATTTTTGCT 117487 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| || ||||| || || || || ||||||||||| ||||| || || Sbjct 117486 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 117427 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 || || || || | ||||| || Sbjct 117426 GTTTTCACGAAGATTTGCATGTT 117404 >seq511 Length=156398 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || ||||| |||||||| ||||| |||| || ||||| || || || || Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || ||||| || || ||| ||||| || || ||||||||||| || | Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || Sbjct 68843 GTCTTCACGAATATCTGCATCTT 68865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158916824359775