Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1733 104 2e-17 seq1725 86.0 4e-12 >seq1733 Length=353299 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| ||||| || || ||||||||||||||||| ||||| || | Sbjct 117404 AACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCT 117463 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| ||| |||| ||||| | |||||| |||||||| ||| | |||||||| Sbjct 117464 TCAGACACAATTGAAAATGTTAAAGC-AAAAATACAAGACAAAGAGGGTATTCCGCCAGA 117522 Query 23727 TCAACAGCGTTTAATATTTGCCGG 23750 || ||||| | |||||||| || Sbjct 117523 CCAGCAGCGCCTTATATTTGCAGG 117546 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | ||||| ||||| || || |||||||| || | | Sbjct 118728 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 118787 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| | ||| ||| ||| ||||| ||||| | || |||||||| Sbjct 118788 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 118847 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || ||||| |||| ||||| || ||||| || Sbjct 118848 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAA 118907 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 118908 TATTCAGAAGGAATCGAC 118925 >seq1725 Length=206553 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || |||||||| || || || || || ||| || Sbjct 95918 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 95859 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| ||||| ||||||||||| |||| |||||||| Sbjct 95858 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 95799 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || || || || ||||| || Sbjct 95798 CAACGGTTGATTTTTGCAGG 95779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337944367844180