Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1733 136 9e-27 seq15754 91.5 4e-13 seq1661 91.5 4e-13 >seq1733 Length=353299 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || ||||| || || | ||| ||||| | ||| || Sbjct 118950 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGT 118891 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| ||||| || || || || ||||| || Sbjct 118890 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 118831 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| |||||| || ||| |||||| || || || | ||||| || | Sbjct 118830 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAG 118771 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||||||||| |||| || | |||||| Sbjct 118770 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| || ||||| || || || || || || || ||||| || || || ||| Sbjct 118230 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATC 118171 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| |||||| ||||| || | || || ||||| ||||||||||||||| Sbjct 118170 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 118111 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||| || | |||||| Sbjct 118110 GTCAATGTTTTTACAAAAATTTGCAT 118085 Score = 100 bits (110), Expect = 7e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| || || ||||| ||||||||||| || |||||||| || |||||| Sbjct 117546 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTAT-TTTTGC 117488 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| || |||||||| | ||||| || | |||||||| || || |||| Sbjct 117487 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAG 117428 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||| | ||| | |||||| || Sbjct 117427 TGTTTTCACGAAGATTTGCATGTT 117404 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||| || ||||| || ||||| || |||||||| ||||| ||| | Sbjct 117878 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 117819 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | |||||| || || ||||| || || || || | | Sbjct 117818 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 117759 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 117758 GTTTTAACAAAGATTTGCAT 117739 >seq15754 Length=2228 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||| || || || || ||||| || ||||| ||||| ||||| || || Sbjct 1084 AATATTTGACCATCTGTGATTGAAATTACATTGGTGGGGATGTAAGCGGAAACGTCGCCG 1025 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| || | ||||| ||||| ||||| ||| Sbjct 1024 GCTTGAGTTTCAATAACTGGCAGTGCTGTAAGTGAGCCACCCCCA 980 >seq1661 Length=132144 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||| || || || || ||||| || ||||| ||||| ||||| || || Sbjct 3954 AATATTTGACCATCTGTGATTGAAATTACATTGGTGGGGATGTAAGCGGAAACGTCGCCG 3895 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| || | ||||| ||||| ||||| ||| Sbjct 3894 GCTTGAGTTTCAATAACTGGCAGTGCTGTAAGTGAGCCACCCCCA 3850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192289252189490