Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1733 107 5e-18 seq1725 98.7 2e-15 >seq1733 Length=353299 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || || |||||||||||||| || || ||||| |||||| Sbjct 117410 CAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCAGAC 117469 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || |||||||| || || || || |||||||| Sbjct 117470 ACAATTGAAAATGTTAAAGCAAAAATACAAGACAAAGAGGGTATTCCGCCAGACCAGCAG 117529 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 117530 CGCCTTATATTTGCAGG 117546 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| ||||| | || |||||| || ||| Sbjct 117742 CAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCTGAC 117801 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||| || |||||||| || ||||| || || |||||||| Sbjct 117802 ACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAGCAG 117861 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 117862 CGATTGATCTTCGCGGG 117878 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || ||||||||| | || || || || ||| Sbjct 118088 CAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCTGAC 118147 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| |||||||| ||||||||||| ||||| Sbjct 118148 ACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAGCAG 118207 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || ||||| || || || || || Sbjct 118208 CGCCTTATTTTTGCTGGTAAGCA 118230 >seq1725 Length=206553 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || |||||||| || || ||||| ||| ||| || Sbjct 95915 CAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCGGAT 95856 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || |||||||||||||| || || || || |||||| Sbjct 95855 ACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAGCAA 95796 Query 178044 CG 178045 || Sbjct 95795 CG 95794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203486979866990