Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_000935.1 Length=36524 Score E Sequences producing significant alignments: (Bits) Value seq5 168 2e-37 >seq5 Length=40538 Score = 168 bits (186), Expect = 2e-37 Identities = 213/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 25039 TTTTCATCGCTTCCAGTAATAAATCCTGTATTGCCCGTTTTGAATTGCGTCGTTCCATGA 25098 ||||||| ||||| || | | ||||| | | |||| ||||| | ||| ||| |||| | Sbjct 20078 TTTTCATTGCTTCAAGCAGAATGTCCTGAACTTCCCGCTTTGACTCGCGGCGTGCCATAA 20019 Query 25099 CCACTTCATCGAGGGTATCTTTAGCAACGATATGGTGAATAAAGACAGGGCGGTTATGTC 25158 | | |||||||| ||| | |||||| || || |||||||| || || |||||||||| Sbjct 20018 CAAGTTCATCGACAGTACCCGCAGCAACAATGTGATGAATAAACACCGGTCGGTTATGTC 19959 Query 25159 CGGCTTGTGCCTGACGAGTCGGGCCTATACGTTCGATAATTTGCTGGTACTGCTCTAAAT 25218 ||||||| || || ||||||||||| ||||| || | ||||||||| |||| || | || Sbjct 19958 CGGCTTGAGCTTGTCGAGTCGGGCCGATACGCTCAACAATTTGCTGATACTCTTCAAGAT 19899 Query 25219 CCCACCAGTGGGaaaaaaaGACCAGAATATTACCGCCGTCCTGTAAATTTAAGCCGTGTC 25278 ||||||||| || | | || ||||| ||||||||||| | || | ||||| | Sbjct 19898 TCCACCAGTGACCGAATACTGCAAGGATATTGCCGCCGTCCTGCAGGTTCAGACCGTGAC 19839 Query 25279 CACAGCTTGCGGGGTGAGCAAAGAGCAAGGGGATTTTGCCATTATTCCAGTCG 25331 | | ||| || || || || || | ||||| || || ||||||||| Sbjct 19838 CGGCGGATGCTGGATGTGCGAACAGAACAGGGATCTTTCCGGCGTTCCAGTCG 19786 Score = 109 bits (120), Expect = 1e-19 Identities = 283/429 (66%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 2526 TATATGTGGACAGCCCTTGCGGGACGTGTGTTAAAGCCCGGTATCAAAGCGGATATGGTG 2585 ||||||||||| || || || || |||||| | | |||||| | || || || ||||| Sbjct 7599 TATATGTGGACCGCGCTGGCCGGGCGTGTGATGGAACCCGGTGTGAAGGCTGACATGGTT 7540 Query 2586 CCCATTTTGGTGGGTGCGCAAGGTTCTGGAAAATCGTCTGGC-GTAGCGGCGTTATCCCC 2644 || | |||| ||||| || || | || || || ||| || ||||| | | || Sbjct 7539 CCGGTGCTGGTCGGTGCTCAGGGCT-TGCGTAAGAGTACGGCAGTTGCGGCAATCGCACC 7481 Query 2645 TGATCCAACtttttttACTGAAATTTCCTTTGCTGAAAAAGATGATGATCTGGCACGTAA 2704 || | ||| || |||||| ||| | ||| ||||| |||||| |||| Sbjct 7480 GGACGTGAATTTCTTCTGTGAAATCAGCTTCGGTGACAAAGAAACCGATCTGTCACGCCG 7421 Query 2705 GATGCGGGGCTGTCTGGTGGCAGAAATTAGCGAATTACGCGGACTTAATACCAAAGAACT 2764 |||||| || ||||| | ||||| || ||| | || || | | ||| || Sbjct 7420 GATGCGCGGAAAGCTGGTCGGTGAAATCAGTGAACTGCGGGGGTTGATGACCCGCGAGGA 7361 Query 2765 GGAATCTATCAAAGCCTTTGTCACTCGGACACATGAAAAGTGGATCCCCAAGTTTAAAGA 2824 ||||| |||||||| || |||| || || ||||| | ||| | || ||||| || Sbjct 7360 AGAATCAATCAAAGCGTTCATCACCCGCACCCATGAGGAATGGGTTCCGAAGTTCCGTGA 7301 Query 2825 ATTCGCCACTCAATTTCCCAGACGCTCATTGAGTATTGGTACTACGAATGAAGATGAATT 2884 ||| || ||||| | || | | || || || || || ||| | | ||||| Sbjct 7300 GTTCCAGACCACGTTTCCGCGCCGGTTACTGTTCATCGGCACGACAAATAAGAACGAATT 7241 Query 2885 TTTAGGTGATAAAACCGGTAATCGGCGTTGGCTGCCCGTTGCAGTTGGAAAAATGGATGT 2944 | | | |||| |||||||| |||| || ||| |||| || | || |||||| ||||||| Sbjct 7240 TCTGGCTGATGAAACCGGTCATCGTCGCTGGTTGCCGGTCACTGTCGGAAAAGTGGATGT 7181 Query 2945 AGAAGGTAT 2953 || |||| Sbjct 7180 TGACAGTAT 7172 Score = 87.8 bits (96), Expect = 4e-13 Identities = 297/457 (65%), Gaps = 17/457 (4%) Strand=Plus/Minus Query 25808 CTTAAACCAGCGAGACGTAAACGCATTATAGGTTCTGCCTAAGCGCTCGCCCTGGTCAAC 25867 || ||||||||| ||| || || ||||| || | ||| | ||| | ||||| |||| Sbjct 19312 CTGAAACCAGCGCGACTGGAAAGCGTTATACGTCCGGCCAAGCCGCACACCCTGATCAAG 19253 Query 25868 AAACCACGCTTGACCCCATAAGTCCATCAGGCCATTAGGTGAAGGCGTACCGGTCAGATT 25927 |||||| ||||| ||||| | ||| || ||| || ||||| || ||||||||||| | Sbjct 19252 AAACCATGCTTGCCCCCACAGATCCTGCAAGCCGTTCGGTGACGGTGTACCGGTCAGTTC 19193 Query 25928 TACCCAGCGATGAACAGATTTATGCGCTATTTTGGCAAGTGCTGCGGTGCGTTTACCGCC 25987 | | || | || || ||| | | | | ||| | || ||||| || Sbjct 19192 AATGAATCGCCGCACCCTCTTGAACGCAACACTACCCAAAGCTTGCGCACGCTTACCACC 19133 Query 25988 TTTGCGTAACCGGAATGATTTCAACCGGGTGCTCTCATCGGCAATAATTGTGCCAAAAGG 26047 || || | |||||||| |||| | ||| ||||| |||| | | || || || Sbjct 19132 TTGCCGCAGGCGGAATGACTTCAGCTTTGTGGATTCATCAGCAACCACTTTGGTGAACGG 19073 Query 26048 CCAAGTGTCACC-AAGTATGTCAACCAGCCAGACGAGATTGTCATAATT--GACCGTAAA 26104 ||| ||| ||| |||| | || |||||||| || | || || || ||| | Sbjct 19072 CCACTTGTTACCTAAGTGT-TCTACCAGCCACGGTAGTTGTTCGTAGTTCGTGGTGTAGA 19014 Query 26105 T--ACGCTGGCATGGGTATTTTTGAGTGCCGCTATCCGTGCTTTGGCAGAG--CCAATGA 26160 | ||||||| | | | || || | ||| |||| ||| | || | | Sbjct 19013 TGGTCGCTGGCCGGCG-------CAACGCTGCGAGTCGTTCTTT--CAGCGTACCGACCA 18963 Query 26161 TGGGTTGTACTTCAATATTACGCAGGTGGCTCCATTTAAGCGCTTCATCTGGCCAGGTGG 26220 || ||||||||| || ||||||||| |||| ||| |||||||||| ||||||||| Sbjct 18962 CCGGCGATACTTCAATGTTGCGCAGGTGGTTCCACTTACGCGCTTCATCCGGCCAGGTGC 18903 Query 26221 ATTGCGCTACCCGTAACGGGGCTAACACTAATGTCGG 26257 | ||| || || | |||||| | ||| | ||||| Sbjct 18902 TTGACGCAACGCGAAGCGGGGCAAGCACCAGCGTCGG 18866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116721976067316