Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq9234 246 6e-61 seq15326 98.7 2e-16 >seq9234 Length=2011 Score = 246 bits (272), Expect = 6e-61 Identities = 843/1289 (65%), Gaps = 55/1289 (4%) Strand=Plus/Plus Query 2279 CTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTT 2338 |||||||||||| || |||||||| ||| |||||||| | ||||| |||||| Sbjct 436 CTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTGTATTG 495 Query 2339 CTCGGTCAGTTTGCGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTG 2398 || ||| | |||||| | || |||||||| | |||||| |||||| |||| | Sbjct 496 CTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAACTGCTC 555 Query 2399 GCGCTCCAGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCC 2458 ||| | || |||||||||||||| || | || ||||||||||| ||| || | Sbjct 556 GCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACCAGTGC 615 Query 2459 GGCGCTGTCGCCAGTGTGTGACGGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGG 2518 ||| ||||| ||| ||| ||||||||||| | ||| || | || || || || Sbjct 616 AGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCG---GAAAG-TGAGCGT 671 Query 2519 ATGGTCG--GCGAACGGGGC--GAAGTC-CTCCCATTCTTCCATCACGTCGACCATGCAG 2573 | || || | || | ||| || ||| |||| ||| ||| | ||||| |||||| Sbjct 672 AGGGCCGAATCCAAAGCGGCTTGACGTCGCTCCACATCTCCCAGC-TGTCGATCATGCAA 730 Query 2574 CGCTGCAGCTCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAAC 2633 ||||| || | | | || ||| | |||| | ||||||| |||| |||||| ||| Sbjct 731 GCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGCACATGAAC 790 Query 2634 AGGTTTTTAAAGTCCTCATCACTGTTT---TCGCGTTTGAGTTGGTCGAGGTCGAACAGG 2690 ||||| || || || |||| | ||||| || | | ||| |||||||| Sbjct 791 AGGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCG---CAGCTCGGCGATATCGAACAGA 847 Query 2691 GTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCG 2750 | |||| || | |||||| || | ||||| || | ||||| | || |||| | Sbjct 848 TCGAAGCCCATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTGCGATCGAGG 907 Query 2751 CAGAGCTGGCCACCGGCGAGCGCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAATA 2810 | ||| ||| ||| ||| ||| ||| |||| || || | |||| | | Sbjct 908 CCCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGGTC--CTTTT 965 Query 2811 CGGCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGC 2870 || ||| |||||||| ||||| | |||||| | || |||||| || | Sbjct 966 TCGC-GCGGCCCTTGTTCCGGTCGTCGCCGGTCCAGAACCCGAAGGCCTCGTGCGACATC 1024 Query 2871 GTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCG 2930 | ||||| ||||| || ||||| |||| ||||| ||||| ||||| | ||| Sbjct 1025 GCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCATCGCACTGGCC 1084 Query 2931 ACTTTGCGCAGCT-TCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCC 2989 | ||| | || ||||| | |||| ||| || | |||||||| || | |||||| Sbjct 1085 AGCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAGTAGAAGTCGCC 1143 Query 2990 GTTATGGCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTT 3049 || || |||||| ||||| ||| |||||| || || || ||||||| |||||||| Sbjct 1144 GTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCGGCGCCGTT--- 1200 Query 3050 GCCA----ATGACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGTA 3105 ||| ||| || ||||| ||||||||||||| ||| | ||| || | | Sbjct 1201 -CCACAGCTTGATGTTC---TCGCCCTTCAGGTCGACGTCGACCTCTTTCGCGAAGTCGA 1256 Query 3106 TGATGTATTCGCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTAT 3165 |||||| ||||||| || ||||||| || ||||||| |||| || ||| Sbjct 1257 CGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGCTTGTT-G 1315 Query 3166 GGCCGGTCTTGAGTGCTCG-CAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATC 3224 ||| |||| | | || ||||| ||||| || ||||| || | ||||| || ||| Sbjct 1316 CGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCACCGATC 1375 Query 3225 TGGCGGGATTTGAGAATGTCGCGAATACGGTGTGCCAGTCCTGCGCGGTACCACTGCAAC 3284 || || | ||| || ||| |||| | || || | | ||| | | |||| | | Sbjct 1376 TGCCGCGCTTTCAGGATGGCGCGCAGGCG--CTGGTACTGCTGATC-GAACCAGTTCTGA 1432 Query 3285 TGGTACTCGAA---AGACTGGTCGAAAAATAATTCCTCCAGCTTTTCGATAGCCTCGTCG 3341 ||| | ||| |||| | || | | || |||||| |||| ||| || Sbjct 1433 TGGAAAGGGAAGTTCGACTCG-CGCAGCTTGGTT--TCCAGCAGCGCGATCTGGTCGGCG 1489 Query 3342 CTGAAAAAATTCTTTTTCGGCTT---CTTGCGCTCACCCTTG---TTGCGGTTGGCGACG 3395 ||| | ||| || |||| |||||||| | | ||||| |||| | Sbjct 1490 CTG----AGTTC--GTTGCGCTTGGGCTTGCGCTTCGGCGCGGCATTGCGCGCCGCGATG 1543 Query 3396 TTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTAGCGGTTAACGCGTGCCAGTCGT 3455 || || || | ||| | ||| |||||||| ||| | ||||| ||| || Sbjct 1544 TTCGGATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCCGTGCGC 1603 Query 3456 TCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCACCGCCTGACTTTTGCGGCTTG 3515 || | ||||||||| || ||||||||||| ||| |||| ||||| | ||| | || ||| Sbjct 1604 TCCAGCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCCGTCTTC 1663 Query 3516 GCGATGAGCTGAATCAGGCGCGCCTCAAG 3544 ||| ||||| ||||| | | ||||||| Sbjct 1664 AGGATCAGCTGGATCAGCCTCACCTCAAG 1692 >seq15326 Length=957 Score = 98.7 bits (108), Expect = 2e-16 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 4157 ATCACCCCGACCGATGACCTTATCGCGATGAATAAAGCCGCGC-AGAAGGTCTACACCTC 4215 ||| | || ||||| || || |||||||| || || | |||| ||||| |||||| ||| Sbjct 152 ATCTCTCCCACCGACGAACTGATCGCGATCAACAA-GAAGCGCCAGAAGATCTACAGCTC 210 Query 4216 AATGGAAATTCAGCCGAATTTTGCCAATACCGGCAAATGCTACCTCGTCGGCCTTGCTGT 4275 | ||| | | |||||| || ||| | |||| ||| ||| || ||||||| || || Sbjct 211 GCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCTGATCGGCCTGGCCGT 270 Query 4276 CACCGATGACCCGGCGAGCCTCGGCACTGAA 4306 |||||| |||| || ||||||||||||||| Sbjct 271 CACCGACAACCCTGCCAGCCTCGGCACTGAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97847348571916