Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_001669.1 Length=5243 Score E Sequences producing significant alignments: (Bits) Value seq4171 239 1e-59 >seq4171 Length=4273 Score = 239 bits (264), Expect = 1e-59 Identities = 135/137 (99%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 2532 GGGATCCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGT 2591 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 GGTATACAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGT 1135 Query 2592 GaaaaaaaTGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAA 2651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 GAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAA 1075 Query 2652 GCTGCAATAAACAAGTT 2668 ||||||||||||||||| Sbjct 1074 GCTGCAATAAACAAGTT 1058 Score = 174 bits (192), Expect = 5e-40 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1 GCCTCGGCCTCTGCATAAATaaaaaaaaTTAGTCAGCCATGGGGCGGAGAATGGGCGGAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 GCCTCGGCCTCTGCATAAATAAAAAAAATTAGTCAGCCATGGGGCGGAGAATGGGCGGAA 314 Query 61 CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGGTTGCTGACTAA 120 || ||||||||||||||||| Sbjct 313 CTGGGCGGAGTTAGGGGCGGGATGGGCGGAGTTAGGGGCGGGACTATGGTTGCTGACTAA 254 Query 121 TTGAGATGCATGCTTTGCATACTTCTGCCTGCTGGGGAGCCTGGGGACTTTCCACACC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 TTGAGATGCATGCTTTGCATACTTCTGCCTGCTGGGGAGCCTGGGGACTTTCCACACC 196 Score = 131 bits (144), Expect = 6e-27 Identities = 72/72 (100%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 107 TGGTTGCTGACTAATTGAGATGCATGCTTTGCATACTTCTGCCTGCTGGGGAGCCTGGGG 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 195 TGGTTGCTGACTAATTGAGATGCATGCTTTGCATACTTCTGCCTGCTGGGGAGCCTGGGG 136 Query 167 ACTTTCCACACC 178 |||||||||||| Sbjct 135 ACTTTCCACACC 124 Score = 125 bits (138), Expect = 2e-25 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 5172 AGCTTTTTGCAAAAGCCTAGGCCTCCAAAAAAGCCTCCTCACTACTTCTGGAATAGCTCA 5231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 AGCTTTTTGCAAAAGCCTAGGCCTCCAAAAAAGCCTCCTCACTACTTCTGGAATAGCTCA 386 Query 5232 GAGGCCGAGGCG 5243 ||||| |||||| Sbjct 385 GAGGCAGAGGCG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16661232024360