Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq9234 203 7e-48 seq15326 113 1e-20 >seq9234 Length=2011 Score = 203 bits (224), Expect = 7e-48 Identities = 825/1278 (65%), Gaps = 43/1278 (3%) Strand=Plus/Plus Query 1537 ACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTTG 1596 |||| |||||||||||| |||| |||||||| || || ||||| | |||||||| Sbjct 431 ACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTG 490 Query 1597 TATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAAGTCCATGCCTTTCCAC 1656 |||| | ||||| ||||||| || ||||| | | |||||| ||| || || Sbjct 491 TATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAAC 550 Query 1657 TGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCACG 1716 || | || | || || | ||| ||||| || | ||| |||||| || | ||||| Sbjct 551 TGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACC 610 Query 1717 CATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCAATCCATACCGGGCGG-GAGCC 1775 | | ||| ||||| || ||| |||||||| || | ||| ||||| | |||| Sbjct 611 AGTGCAGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTGAGCG 670 Query 1776 GAACGGATTGGCGGCAAA-CGGCGCATAGTCTTCCCAT-TCTTCCAGCGTGTCGACCATG 1833 | || | |||| |||| ||| ||| ||| ||||| |||||| |||| Sbjct 671 TA--GGGCCGAATCCAAAGCGGCTTGACGTCGCTCCACATCTCCCAGC-TGTCGATCATG 727 Query 1834 CAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAACAAATTCACACATG 1893 || |||| || | | | || ||||| ||| ||||||| | || | |||||| Sbjct 728 CAAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGCACATG 787 Query 1894 AACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCA---ATGTCGAAC 1950 |||||||| || |||||| ||||| ||| | | || |||| || |||||| Sbjct 788 AACAGGTTCGCGAACTCGTCGAGGCTGTATTCC---TCGCGCAGCTCGGCGATATCGAAC 844 Query 1951 AGCGTGCAGCCGCCTTTC-AGGGCGTCCTCAATGGTGACAATCTGTCGCCACTGGCCGTC 2009 || | |||| | | | | |||||| || | ||||| || | ||||| | || || Sbjct 845 AGATCGAAGCC-CATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTGCGATC 903 Query 2010 CGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGCGTTCGGC 2069 | || | || ||| || || || ||| |||||| ||| | || Sbjct 904 GAGGCCCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGGTCCTT 963 Query 2070 GGCGCTGGCGCGTCCCCGGTTAAACAGT--TCACCCGACCAGAACGGGTAGGCGTCGTGC 2127 | ||||| ||| ||| | || || || | ||||||| | |||| |||||| Sbjct 964 TT---TCGCGCGGCCCTTGTTC--CGGTCGTCGCCGGTCCAGAACCCGAAGGCCTCGTGC 1018 Query 2128 GCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTGAGGCCATACCT 2187 | || || || || || |||||||||||| |||| ||| | || || ||||| | Sbjct 1019 GACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCATCGCA 1078 Query 2188 GATGCCACCTTACGCAG-TACCTGAAAATTCGGGATCCAGAAAATCTCATCGACGTACAG 2246 |||| ||| | | |||||| | |||| ||| |||| ||||||| ||| | Sbjct 1079 CTGGCCAGCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAGTAGAA 1137 Query 2247 GTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGCC 2306 |||||||| || ||||| || || ||| ||||||||| || || ||||| | ||||| Sbjct 1138 GTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCGGCGCC 1197 Query 2307 GTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGACGGGCAAAGGC 2366 ||| | ||| || || || ||||||| ||||| ||| || ||| | Sbjct 1198 GTTC---CACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCTCTTTCGCGAAGTC 1254 Query 2367 GATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCCGACAGAAAAATCTGGTT 2426 || |||||| ||||||| | ||||| | || ||||||| |||| || ||| Sbjct 1255 GACGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGCTTGTT 1314 Query 2427 ATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAAT 2486 | || |||| ||| |||||||||||||| ||||| ||| | ||||| || || Sbjct 1315 GCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCACCGAT 1374 Query 2487 CTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCACGATACCAGTGCAG 2546 ||| || | ||||||||| |||| | ||| || | | | | ||| |||||| | | Sbjct 1375 CTGCCGCGCTTTCAGGATGGCGCGCAGGCGCTGGT--ACTGCTGATCGA-ACCAGTTCTG 1431 Query 2547 CTGATAGTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCGATGGCCTCGTCACT 2606 || | ||| | ||| | | |||||| |||| ||| | || Sbjct 1432 ATGGAAAGGGAAGTTCGACTCGCGCAGCTTGGTTTCCAGCAGCGCGATCTGGTCGGCGCT 1491 Query 2607 GAAAAAATTCTTT----TTCGGTTTGCGC--CGTC-CGCCTTTGTTACGGTTAGCGACGT 2659 | | ||| || || || |||||| || | || | ||| || |||| || Sbjct 1492 G----AGTTCGTTGCGCTTGGGCTTGCGCTTCGGCGCGGCATTG---CGCGCCGCGATGT 1544 Query 2660 TCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAGCGGTTGACCCGTGCCAGTCGTT 2719 ||||||| | ||| | ||| |||||||| ||| | ||| || ||| || | Sbjct 1545 TCGGATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCCGTGCGCT 1604 Query 2720 CAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTCTGTGGTTTGA 2779 | | ||| || ||||| |||||||| |||||| |||| |||||||| |||| | || | Sbjct 1605 CCAGCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCCGTCTTCA 1664 Query 2780 TGATGAGCTGGGTCAGCC 2797 ||| |||||| |||||| Sbjct 1665 GGATCAGCTGGATCAGCC 1682 >seq15326 Length=957 Score = 113 bits (124), Expect = 1e-20 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 3413 GCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGC-A 3471 || || | |||| | ||| | || ||||| || || |||||||| |||||| |||| | Sbjct 137 GCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCAACAAGAA-GCGCCA 195 Query 3472 GAAGGTCTACACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATGTTATCT 3531 |||| |||||| ||| | ||| | | |||||| || ||| |||||| ||| ||||| Sbjct 196 GAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCT 255 Query 3532 GGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCACGGAA 3577 | | || |||||||||||||| |||| || ||||||||||| ||| Sbjct 256 GATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107345445018330