Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11176 127 2e-24 seq18158 82.4 7e-11 >seq11176 Length=1573 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||| |||| || ||||| || || |||| || || | || Sbjct 497 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 556 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||||| |||||| || ||| | | ||||||||||| | || || || || Sbjct 557 GATACTATCGAAAATGTCAAAGCAAAGATTCAAG-ACAAGGAAGGCATTCCACCAGATCA 615 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| ||| | || || ||||||||| Sbjct 616 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAA 675 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || |||||||| || || ||||| ||| Sbjct 676 TATTCAGAAGGAATCGACGCTGCACCTGGTTCTT 709 >seq18158 Length=729 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| ||||| || |||| ||||| ||||||||| | || ||||| | || Sbjct 155 CATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTC 96 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| || || | || |||||| ||||| | || || || || Sbjct 95 TGACACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCA 36 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT 31341 |||||| || || || ||||| || || || Sbjct 35 GCAGCGCCTTATTTTTGCTGGTAAGCATTT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445632876246960