Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq9234 428 1e-115 seq17740 244 2e-60 seq15326 165 2e-36 >seq9234 Length=2011 Score = 428 bits (474), Expect = 1e-115 Identities = 1081/1618 (67%), Gaps = 54/1618 (3%) Strand=Plus/Plus Query 2459 CGTTTGCTCATCCGAAAATCTCCATGCGGCCGGTATTCGCGGGGGTCTGCCCCT-CGAGC 2517 ||||||||||||| |||||||||||||| | | ||| | | | || |||| Sbjct 111 CGTTTGCTCATCCAAAAATCTCCATGCGTGAGCTGC-CGCCGACCACGTCGCCGGCGAGT 169 Query 2518 GGCTCGTTTTGCAATGCGTGGAATAGCGCCCAGGCCAGATCGGCGTGGCCGGTGTTGTCG 2577 | ||||| | | ||||| | ||||| || ||||| ||||| || ||| ||| Sbjct 170 GATTCGTTGTCGAGCGCGTGCATCGTTGCCCACGCAAGATCCGCGTGTCCCGTGACTTCG 229 Query 2578 TTGCGGCCGGCGGTATAGGTGAACTGGCGCCCACCGGCCGTGATGGTCTTGCG-GATAGC 2636 |||||| | | ||||| | | || || | ||| |||| | | || ||| || Sbjct 230 GAGCGGCCCGAGTCGTAGGTCATGTTTCGGCCGCTGGCGGTGA-GCACGCGCTTGATGGC 288 Query 2637 CATCAGCGCCTGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGAT 2696 ||| | ||| ||| | ||||||||| || || ||||| || || || || || | ||| Sbjct 289 CATGAAGGCCGCGGCGATGTCGGTCCATCCAGCATCGAACTCCAGTCGCCCCTTGTGGAT 348 Query 2697 CACTGACCAG----GCCTTCATGACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGG 2752 |||| | ||||||| |||| || |||||||||| ||| | || Sbjct 349 ----GACCTGTTGCGCCTTCAGCACCAGGCGCTGCTTCACCTCGATGCTGTACTGGTAGC 404 Query 2753 TGCGCACCCCCGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGG 2812 |||| || ||||||| || | ||| ||||||| |||| |||||| Sbjct 405 CCTTCACCTGGGGAAAGAACTTCTCGACGATCTGGAACACGCCAGCACCCAGGCCGGTCT 464 Query 2813 TGTCGACGCCGATGTAGGTGACCCAGTAGCGCTGGGTCACCTTGCGGATGAACTCGGCCT 2872 |||||| |||||| | ||| ||| ||||||| | | |||||| |||||||| Sbjct 465 TGTCGATGCCGATATGCACGACGTTGTATTGCTGGGTGATCCGACGGATGGCCTCGGCCT 524 Query 2873 GTTCGGCGAAGTCCTTGCCGCGGAATTGATGGCGCTCCAGCACGCGGAACTTGCCGCCCG 2932 | | |||||||| ||| ||| || | ||| | || | ||||||||||||||| | Sbjct 525 GCGCCTCGAAGTCCGAGCCCTTGAACTGCTCGCGATGTAGGATGCGGAACTTGCCGCCTG 584 Query 2933 GTACCGCCGGAGGCGCCACCACCACCAGACCCGCGGTGTCGCCCGTCTCGGCGGGGTCAT 2992 | || ||| ||||| ||||||||||| | |||| |||||| | || | ||||| | Sbjct 585 GCACGCGCGGCGGCGCGACCACCACCAGTGCAGCGGCATCGCCCTTGTCTGATGGGTCGT 644 Query 2993 AGCCCAGCCACACCTGGCGATCACCGAACGGCCGCAGCGCGAACGGCTTGTAGTC-CTCC 3051 |||| | ||||||| | | | || | ||||| | | | ||||||| ||| || Sbjct 645 AGCCGACCCACACCGGAAAGTGAGCGTAGGGCCGAATCCAAAGCGGCTTGACGTCGCT-- 702 Query 3052 GACCACAGGTCCCAGCTATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTC 3111 ||||| |||||||| |||| |||||| | ||||| | | || || ||| | | Sbjct 703 --CCACATCTCCCAGCTGTCGATCATGCAAGCCTGCATCTGCGCCAGCGTGAACAGCGAC 760 Query 3112 GCGCCGTCGTCGACGAACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCG 3171 || |||||||| |||||||||||| | ||||||| ||| | ||| | ||| || Sbjct 761 AAGCTGTCGTCGATGAACTGGCACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTCC 820 Query 3172 AGACGCAGCTCGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTG 3231 ||||||||| |||| |||||||||||| |||| || |||| || | ||| Sbjct 821 TCGCGCAGCTCGGCGATATCGAACAGATCGAAGCCCATCGCGACGGCGTCTTCCACCGTG 880 Query 3232 ACGATCTGGCGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGCAGGGCGTCATGACTT 3291 ||||| | |||||| |||| || || ||| | ||| || | || ||| ||| Sbjct 881 ACGATGTCGCGCCATTTGCGATCGAGGCCCAG-----CATGCCGCCGCGCAGCAT--CTT 933 Query 3292 ACGTC-GATCTTGATGCGATCGGCGGCCGGCTT------GCCCTTGTTGAAGCGCTCGCC 3344 | | | | | |||||| || | || || ||||||||| | ||||| Sbjct 934 GTGGCTGGTGTCGATGCGGACGTGGTCCTTTTTCGCGCGGCCCTTGTTCCGGTCGTCGCC 993 Query 3345 AGTCCAGAATGTGTAGGCCTCATGCGCCATCGAACTGGGCGTCGAGAAGTAGGTCCGGCG 3404 |||||||| | ||||||| |||| ||||| |||||||||||| |||||| ||| Sbjct 994 GGTCCAGAACCCGAAGGCCTCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCG 1053 Query 3405 GTAGCGCTTCTGCATCGCCATACCGCTGGCGACCTTGTTCAGCTCCTTGAA--CTTGAAC 3462 || |||| ||| ||||| | ||||| | |||||| | || | |||| | | || Sbjct 1054 CCAGTGCTTGTGCGAAGCCATCGCACTGGCCAGCTTGTTGATCTGCCTGAAGCGTGGGAC 1113 Query 3463 GTCCAGAAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTG 3522 ||| || || || ||||||||||||| |||||| |||| |||||| ||| |||||| Sbjct 1114 --CCAAAAAAATTCATCGAAGTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTG 1171 Query 3523 GTGCCGAGGAAGTGCAATTCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCG 3582 ||||| |||||| || || ||||||||| ||| |||| ||||||||||| ||| Sbjct 1172 GTGCCAAGGAAGATCAGCTCGGCGCCGTTCCACAGCTTGATGTTCTCGCCCTTCAGGTCG 1231 Query 3583 ACACCTACCGCATCGCGCGCGAAGGCCTGGATATACGCCTTGAAGATGTGCGCTTGGGCC 3642 || | ||| || ||||||| | ||| || ||| ||| || || ||| Sbjct 1232 ACGTCGACC---TCTTTCGCGAAGTCGACGATGTAGCTGCGGAACTGGTGGGCCTGCGCC 1288 Query 3643 TTGCTGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCG 3702 || ||||||| ||| | || |||||||||| || | || || |||||||||| Sbjct 1289 TTCGACGCCGACAAGAAAAGCTTGTTGCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCG 1348 Query 3703 CGGGCGAAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGCGGGTTCGCTGA 3762 || | ||||| | || || ||||||||||||| || || || |||| ||||| Sbjct 1349 CGCGAAAAGTAATAGGTCGCACCGATCTGCCGCGCTTTCAGGATGGCGCGCAGGCGCTG- 1407 Query 3763 TTAC--CCGCGCGGTACCAGTCTTTCTGGTAGTCGAAG--CAAC-CGTCGAGGAAGGCCT 3817 ||| | | | | |||||| | ||| | |||| | || || || || | Sbjct 1408 GTACTGCTGATC-GAACCAGTTCTGATGGAAAGGGAAGTTCGACTCGCGCAGCTTGGTTT 1466 Query 3818 CGACCAGTTTCTCGGTCAGTTCCTCACTGATGTCGTTGCGCTTCGGCTTGCGCTTGGGAC 3877 | | ||| | || || | || | |||| ||||||||||| ||||||||||| || Sbjct 1467 CCAGCAG---CGCGATCTGGTCGGCGCTGAGTTCGTTGCGCTTGGGCTTGCGCTTCGGCG 1523 Query 3878 CTTCGTTACGCTTGGCAAGCTCGGGGTTCAGGTCGGTTTCCGTACCACCGCC--CTGGTA 3935 | | || ||| || | | || |||| ||| || || || | | | |||||| Sbjct 1524 CGGCATTGCGCGCCGCGATGTTCGGATTCAAGTCCCCTT-CGCGCC-CGGTCTGCTGGTA 1581 Query 3936 GCGCTGGATCCGCGCCTGGCGCTCAAGCTGCCGATGCAGCAGGTCGATTTCCTTGTAGTC 3995 || || |||||| |||||| |||||||| ||| ||||| || ||||||||||| Sbjct 1582 CTTCTCGACGCGCGCCGTGCGCTCCAGCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTC 1641 Query 3996 ACCGCCGGTCTT-GCCGTCCTTCAGGATCAACTGAACCAACCGGGCTTCCAGGGCGCC 4052 ||||||||||| |||| ||||||||||| ||| | || || | || || ||||| Sbjct 1642 GCCGCCGGTCTTCTCCGT-CTTCAGGATCAGCTGGATCAGCCTCACCTCAAGCGCGCC 1698 >seq17740 Length=755 Score = 244 bits (270), Expect = 2e-60 Identities = 335/461 (73%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 1618 GTCGTCGCGGCTGATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCGCTGAC 1677 |||||| ||| | ||| ||||| | |||| |||||||||||||| |||||| ||| Sbjct 751 GTCGTCCTTGCTCACGTTTTTGATGGCCGCGAAGTCGTCCTTGGCCGCGACCTCGGAGAC 692 Query 1678 CGGAATCAGTTGGATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTGCGGAA 1737 ||||||||| | | ||||| ||| ||| ||| |||| | ||||||||||||||| Sbjct 691 CGGAATCAGCTTTAGGCCCTCGGCCTTGCCGCCCGGGGCGTGCAGGAACAGGTTGCGGAA 632 Query 1738 ATTGCCAGGCCCCTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCCTCATT 1797 ||||| || ||||| || |||||||||| ||| || || || ||| || | Sbjct 631 GTTGCCCGGTCCCTTGGCCCCCTTCAGCGCCTCGCGTAGTGCATCCGCGTCGGCCG--TG 574 Query 1798 CTGTGC--GGCGTCGGTCATGTAGAGGATGAAGCCGGCGTGGCTGCCGTTGTTGTAGTAC 1855 ||| | |||||| | || ||||||||||||||||||||| |||||| ||||||| Sbjct 573 CTGACCTGGGCGTCCGACAGGTAGAGGATGAAGCCGGCGTGCGACCCGTTGGCGTAGTAC 514 Query 1856 TTACGCCGGAACAGCGTGGCCGACTCGTTCAGCAGGGCGCTCTGTAGGGCGCAGAACCAC 1915 || |||||||||| ||||| | |||||| ||| ||| ||| || |||| || || Sbjct 513 TTCCGCCGGAACATGGTGGCTGCCTCGTTGAGCCAGGCCGACTGCAGCGCGCTGATGTAC 454 Query 1916 TCCGGCACTCCGTAGATTTCCTGATTGATGTCGGCCTCGCGCAGTTGGATCACGCTGCCC 1975 || |||| |||||||| || ||||||| ||| ||||||| || |||| || || || Sbjct 453 TCGGGCAAACCGTAGATCTCTTGATTGACGTCATCCTCGCGAAGGTGGAACA-GCGAGCC 395 Query 1976 TTCTCG-AATTCGTGCTCATCCTTCCAGCTGCGCACCTGGTAGAA----CGTCTCCAGAT 2030 || | || |||||||| | | ||||| |||||| | |||| || | || | | Sbjct 394 GGCTGGAAACTCGTGCTCCTGCAGCCAGCCGCGCAC---GAAGAAATACCGGC-CCGGCT 339 Query 2031 CGGTGCCGCGGCGCATGTACTTGGCCAGCGGCGCCTGCAGC 2071 | ||||||||| ||||||||||||||| ||||||| Sbjct 338 CCTGCCCGCGGCGCGTGTACTTGGCCAGCGCGTGCTGCAGC 298 >seq15326 Length=957 Score = 165 bits (182), Expect = 2e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 4553 GAGTTCGGCGCCTATGGCGACGTGCTGGCGTGCAAGGCGGAAGAGATCGACATCAACGGG 4612 || |||||||| |||||||||||||||||| |||| | |||||| |||| ||| ||| Sbjct 65 GAATTCGGCGCGTATGGCGACGTGCTGGCGGTCAAGACCGAAGAGGTCGAGATCGGCGGC 124 Query 4613 CAGAAGAAGCTGGCCCTCTTCGCCCAACTGGAGCCCAACCAGGCGCTGCTGGAACTGAAC 4672 |||||||| ||||||| || || | |||| | | | ||| | | | ||| Sbjct 125 GCCAAGAAGCTCGCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCAAC 184 Query 4673 AAGCAGCGGCAGAAGGTCTACACCTCGGTCGAGATCGATCCCAAGTTCGCCGACACCGGC 4732 ||| |||| |||||| |||||| |||| |||| | || |||||||||||||||| | Sbjct 185 AAGAAGCGCCAGAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGAC 244 Query 4733 AAGGCCTACTTGGTCGGCCTGGCCATCACCGACTCCCCCGCCAGCCTGGGTACCGA 4788 |||||||| || ||||||||||| |||||||| ||| |||||||| || || || Sbjct 245 AAGGCCTATCTGATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGA 300 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 5238 CACCATGCGCAACGAAACCCGCAAACAGTTCGACGCCTACCTGGCGCAGCTCGCCAAGCT 5297 |||||||||||| ||| |||| |||||||||| | || ||||| |||| || Sbjct 781 CACCATGCGCAAAGAACTCCGCCTCGCCATCGACGCCTATTTCGCTCAGCTGGCCAGCCT 840 Query 5298 CAACGGCGTGAACTCCGCCGTCCAGACCTTCGCCGTCGAGCCGAGTGTCCAGCAGAAGCT 5357 ||||| ||| | | ||| | |||| ||| ||||| |||| | || ||||||| ||| Sbjct 841 CAACGACGTCACCACCGTCACCCAGCGTTTCAACGTCGTGCCGCGCGTGCAGCAGACGCT 900 Query 5358 GGAGCAACGTATTCAGGAGTCCAGCGAGTTCCTGAAGCAGATCAACGTCTACGGCGT 5414 ||| || || ||||| || || |||||||| | ||||||||| |||||| Sbjct 901 GGAACAGAAGATGCAGGAATCGAGTTCGTTCCTGAGTCGCATCAACGTCATCGGCGT 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113702035668052