Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq18158 100 3e-16 seq4840 86.0 6e-12 >seq18158 Length=729 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || ||||||||| | || || || |||||||| ||||| || ||||||||||| ||| | Sbjct 9 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTC-CTGAAT 67 Query 139679 TTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCC 139737 || | |||| | ||| | |||||| | | ||| || || | ||| | ||||||||| Sbjct 68 CTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCC 127 Query 139738 GGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| |||||||| || |||||||| Sbjct 128 CGTCAATGTTTTTACAAAAATTTGCAT 154 >seq4840 Length=3826 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| | |||| || |||||||| |||||||||||||||||||| ||||| Sbjct 2412 TACCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCG 2471 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | || | ||| || | || || ||||||| || | ||| || || || | Sbjct 2472 CTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2531 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 | ||||| || || |||||||| Sbjct 2532 AAGTTTTGACAAAAATTTGCAT 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495915410229600