Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq9234 190 4e-44 seq15326 113 9e-21 >seq9234 Length=2011 Score = 190 bits (210), Expect = 4e-44 Identities = 826/1281 (64%), Gaps = 49/1281 (4%) Strand=Plus/Plus Query 1539 ACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTTA 1598 |||| |||||||||||| |||| |||||||| || || ||||| | ||||||| Sbjct 431 ACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTG 490 Query 1599 TATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCAC 1658 |||| | ||||| ||||||| || ||||| | | |||||| ||| || || Sbjct 491 TATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAAC 550 Query 1659 TGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCAC- 1717 || | || | || || | ||| ||||| || | ||| |||||| || | ||||| Sbjct 551 TGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACC 610 Query 1718 ---GCATCCGGCACTGTCGCCACGGTGTGACGGGTCGTAACCAATCCATACCGGGCGG-G 1773 ||| | |||| ||||| || ||| |||||||| || | ||| ||||| | | Sbjct 611 AGTGCAGC-GGCA---TCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTG 666 Query 1774 AGCCGAACGGATTGGCGGCAAAGGGTGCATA--GTCTTCCCAT-TCTTCCAGCGTGTCGA 1830 ||| | || | ||||| | || | ||| ||| ||| ||||| |||||| Sbjct 667 AGCGTA--GGGCCGAATCCAAAGCG-GCTTGACGTCGCTCCACATCTCCCAGC-TGTCGA 722 Query 1831 CCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAACAAATTCAC 1890 |||||| |||| || | | | || ||||| ||| ||||||| | || | | Sbjct 723 TCATGCAAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGC 782 Query 1891 ACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCA---ATGT 1947 ||||||||||||| || |||||| ||||| ||| | | || |||| || | Sbjct 783 ACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTCC---TCGCGCAGCTCGGCGATAT 839 Query 1948 CGAACAGCGTGCAGCCGCCTTTC-AGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGG 2006 ||||||| | |||| | | | | |||||| || | ||||| || | ||||| | | Sbjct 840 CGAACAGATCGAAGCC-CATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTG 898 Query 2007 CCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGCGT 2066 | || | || | || ||| || || || ||| |||||| ||| | Sbjct 899 CGATCGAGGCCCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGG 958 Query 2067 TCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGT--TCACCCGACCAGAACGGGTAGGCGT 2124 || | ||||| ||| ||| | || || || | ||||||| | |||| | Sbjct 959 TCCTTTT---TCGCGCGGCCCTTGTTC--CGGTCGTCGCCGGTCCAGAACCCGAAGGCCT 1013 Query 2125 CGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGGCTCTGTGAGGCCA 2184 |||||| || || || || || |||||||||||| |||| ||| | || || |||| Sbjct 1014 CGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCA 1073 Query 2185 TACCTGATGCCACCTTACGCAG-TACCTGAAAATTCGGGATCCAGAAAATCTCGTCGACG 2243 | | |||| ||| | | |||||| | |||| ||| |||| || |||| | Sbjct 1074 TCGCACTGGCCAGCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAG 1132 Query 2244 TACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTT 2303 || | |||||||| || |||||| || || ||| ||||||||| || || ||||| | Sbjct 1133 TAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCG 1192 Query 2304 GCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGACGGGCA 2363 |||||||| | ||| || || || ||||||| ||||| ||| || Sbjct 1193 GCGCCGTTC---CACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCTCTTTCGCG 1249 Query 2364 AAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATC 2423 ||| ||| |||||| ||||||| | ||||||| || ||||||| |||| | Sbjct 1250 AAGTCGACGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGC 1309 Query 2424 TGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCG 2483 | ||| | || |||| ||| |||||||||||||| ||||| ||| | ||||| Sbjct 1310 TTGTTGCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCA 1369 Query 2484 CCAATCTGGCGGGATTTCAGGATATCTCGGATGCGGTGCTCAAGCCCGGCGCGATACCAG 2543 || ||||| || | ||||||||| | || | ||| || | | | | ||| ||||| Sbjct 1370 CCGATCTGCCGCGCTTTCAGGATGGCGCGCAGGCGCTGGT--ACTGCTGATCGA-ACCAG 1426 Query 2544 TGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCGATGGCCTCG 2603 | | || | ||| | ||| | | |||||| |||| ||| Sbjct 1427 TTCTGATGGAAAGGGAAGTTCGACTCGCGCAGCTTGGTTTCCAGCAGCGCGATCTGGTCG 1486 Query 2604 TCACTGAAAAAATTCTTT----TTCGGTTTGCGACGCCCGC-CTTTGTTGCGGTTAGCGA 2658 | ||| | ||| || || || ||||| | | || | ||||| |||| Sbjct 1487 GCGCTG----AGTTCGTTGCGCTTGGGCTTGCG-CTTCGGCGCGGCATTGCGCGCCGCGA 1541 Query 2659 CGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGACTGTAGCGGTTGACCCGTGCCAGTC 2718 ||||||||| | ||| | ||| |||||||| ||| | ||| || ||| | Sbjct 1542 TGTTCGGATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCCGTGC 1601 Query 2719 GTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTCTGCGGTT 2778 | || | ||| || ||||| |||||||| |||||| |||| |||||||| |||| || | Sbjct 1602 GCTCCAGCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCCGTCT 1661 Query 2779 TGATGATGAGCTGGGTCAGCC 2799 | | ||| |||||| |||||| Sbjct 1662 TCAGGATCAGCTGGATCAGCC 1682 >seq15326 Length=957 Score = 113 bits (124), Expect = 9e-21 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 3415 GCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGC-A 3473 || || | |||| | ||| | || ||||| || || |||||||| |||||| |||| | Sbjct 137 GCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCAACAAGAA-GCGCCA 195 Query 3474 GAAGGTCTACACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATGTTATCT 3533 |||| |||||| ||| | ||| | | |||||| || ||| |||||| ||| ||||| Sbjct 196 GAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCT 255 Query 3534 GGTGGGGCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCACGGAA 3579 | | || |||||||||||||| |||| || ||||||||||| ||| Sbjct 256 GATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98180053870140