Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq9234 192 1e-44 seq15326 107 4e-19 >seq9234 Length=2011 Score = 192 bits (212), Expect = 1e-44 Identities = 648/993 (65%), Gaps = 26/993 (3%) Strand=Plus/Plus Query 1538 ACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGATGTATTCGACGTTG 1597 |||| |||||||||||| |||| |||||||| || || ||||| | |||||||| Sbjct 431 ACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTG 490 Query 1598 TATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAAGTCCATGCCTTTCCAC 1657 |||| | ||||| ||||||| || ||||| | | |||||| ||| || || Sbjct 491 TATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAAC 550 Query 1658 TGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGTACCACG 1717 || | || | || || | ||| ||||| || | ||| |||||| || | ||||| Sbjct 551 TGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACC 610 Query 1718 CATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCAATCCAGACCGGGCGG-GAGCC 1776 | | ||| ||||| || ||| |||||||| || | ||| ||||| | |||| Sbjct 611 AGTGCAGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTGAGCG 670 Query 1777 GAACGGATTGGCGGCAAA-CGGCGCATAGTCTTCCCAT-TCTTCCAGCGTGTCGACCATG 1834 | || | |||| |||| ||| ||| ||| ||||| |||||| |||| Sbjct 671 TA--GGGCCGAATCCAAAGCGGCTTGACGTCGCTCCACATCTCCCAGC-TGTCGATCATG 727 Query 1835 CAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCGTCAACAAATTCACACATG 1894 || |||| || | | | || ||| | |||| ||||||| | || | |||||| Sbjct 728 CAAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGCACATG 787 Query 1895 AACAGGTTTTTAAAATCGTCGGCGCTGTTTTC---GCGTTTAAGCTGCTCAATGTCGAAC 1951 |||||||| || |||||| ||||| ||| ||| |||| | || |||||| Sbjct 788 AACAGGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCGC---AGCTCGGCGATATCGAAC 844 Query 1952 AATGTGCAGCCACCTTTC-AGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCGTC 2010 | | |||| | | | | |||||| || | ||||| || | ||||| | || || Sbjct 845 AGATCGAAGCC-CATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTGCGATC 903 Query 2011 CGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGCGTTCGGC 2070 | || | || ||| || || || ||| |||||| ||| | || Sbjct 904 GAGGCCCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGGTCCTT 963 Query 2071 GGCGCTGGCGCGTCCCCGGTTAAACAGT--TCACCGGACCAGAACGGATAGGCGTCGTGC 2128 | ||||| ||| ||| | || || |||| ||||||| |||| |||||| Sbjct 964 TT---TCGCGCGGCCCTTGTTC--CGGTCGTCGCCGGTCCAGAACCCGAAGGCCTCGTGC 1018 Query 2129 GCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTGAGGCCATACCT 2188 | || || || || || |||||||||||| |||| ||| | || || ||||| | Sbjct 1019 GACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCATCGCA 1078 Query 2189 GATGCCACCTTACGCAG-TACCTGAAAATTCGGGATCCAGAAAATCTCGTCGACGTACAG 2247 |||| ||| | | |||||| | |||| ||| |||| || |||| ||| | Sbjct 1079 CTGGCCAGCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAGTAGAA 1137 Query 2248 GTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTTTGCGCC 2307 |||||||| || |||||| || || ||| ||||||||| || || ||||| | ||||| Sbjct 1138 GTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCGGCGCC 1197 Query 2308 GTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGCCGGGCAAAGGC 2367 ||| | ||| || || || ||||||| ||||| ||| || ||| | Sbjct 1198 GTTC---CACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCTCTTTCGCGAAGTC 1254 Query 2368 GATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTT 2427 || |||||| |||||| | ||||||| || ||||||| |||| || ||| Sbjct 1255 GACGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGCTTGTT 1314 Query 2428 ATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGCGCCAAT 2487 | || |||| ||| |||||||||||||| ||||| ||| | ||||| || || Sbjct 1315 GCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCACCGAT 1374 Query 2488 CTGGCGGGATTTCAGGATATCGCGGATGCGGTG 2520 ||| || | ||||||||| |||| | ||| || Sbjct 1375 CTGCCGCGCTTTCAGGATGGCGCGCAGGCGCTG 1407 >seq15326 Length=957 Score = 107 bits (118), Expect = 4e-19 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 3414 GCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGC-A 3472 || || | |||| | ||| | || ||||| || || |||||||| |||||| |||| | Sbjct 137 GCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCAACAAGAA-GCGCCA 195 Query 3473 GAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAACACCGGCAAATGTTATCT 3532 |||| |||| | ||| | ||| | | |||||| || ||| |||||| ||| ||||| Sbjct 196 GAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCT 255 Query 3533 GGTGGGGCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCACGGAA 3578 | | || |||||||||||||| |||| || ||||||||||| ||| Sbjct 256 GATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104437472748276