Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11176 143 6e-29 seq18158 114 3e-20 seq4840 113 1e-19 >seq11176 Length=1573 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||||||||| || || | || | |||||| Sbjct 709 AAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTC 650 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 649 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 590 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||||||| |||||||| | ||||| || || || || ||||| || || Sbjct 589 TTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGT 530 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || |||||||| ||||||||| Sbjct 529 TTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 496 >seq18158 Length=729 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| || | ||| ||||| ||||| || |||||||| ||||||||| Sbjct 9 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 68 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||| | || || || || || |||| || || ||||| || Sbjct 69 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 128 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | |||||||||||| || ||||| Sbjct 129 GTCAATGTTTTTACAAAAATTTGCAT 154 >seq4840 Length=3826 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | || ||| ||||| |||||||| |||||||| ||||| || || ||| Sbjct 2414 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2473 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | ||||| | ||| ||||| || ||||| || |||||||| | Sbjct 2474 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2533 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| Sbjct 2534 GTTTTGACAAAAATTTGCAT 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151044890826804