Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq9234 219 8e-53 >seq9234 Length=2011 Score = 219 bits (242), Expect = 8e-53 Identities = 833/1285 (65%), Gaps = 47/1285 (4%) Strand=Plus/Plus Query 2281 CTGGAATACACCGAGACCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTT 2340 |||||| || || ||| ||||| || ||| |||||||| | |||||||||||| Sbjct 436 CTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTGTATTG 495 Query 2341 CTCAGTGAGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTG 2400 || |||| || |||||| | || |||||||| | |||||| ||| || |||| | Sbjct 496 CTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAACTGCTC 555 Query 2401 ACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCC 2460 || | || ||||| |||||||| || | || ||||||||||| || || | | Sbjct 556 GCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACCAGTGC 615 Query 2461 GGCACTGTCGCCGGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGC-GTGAGCCGAATG 2519 || ||||| ||| || ||||||||||| | ||| ||||| |||||| | Sbjct 616 AGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTGAGC-----G 670 Query 2520 GATGGTCGG--CGAACGGGGC--GAAGTC-CTCC-CATGTTTCCATCACGTCGACCATGC 2573 | || || | || | ||| || ||| |||| ||| | ||| | ||||| ||||| Sbjct 671 TAGGGCCGAATCCAAAGCGGCTTGACGTCGCTCCACATCTC-CCAGCT-GTCGATCATGC 728 Query 2574 AGCGCTGCAGCTCCTCGAACGGGAATACAGATGCCTTATCGTCGACAAACTCGCACATAA 2633 | ||||| || | | | || ||| | || | ||||||| |||| |||||| | Sbjct 729 AAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGCACATGA 788 Query 2634 ACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGG 2693 ||||||| || || || |||| ||| | |||| | ||| |||||||| Sbjct 789 ACAGGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCGCAGCTCGGCGATATCGAACAGAT 848 Query 2694 TGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGC 2753 | |||| || | |||||| || | ||||| || | ||||| | | || || Sbjct 849 CGAAGCCCATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTGCGATCGAGGC 908 Query 2754 AAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCAC 2813 || | || ||| ||| |||| ||| ||||||| || | |||| Sbjct 909 CCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGGTCCTTTT--- 965 Query 2814 TGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCG 2873 | ||||| |||||||| ||||| | |||||| | || |||||| || || Sbjct 966 TCGCGCGGCCCTTGTTCCGGTCGTCGCCGGTCCAGAACCCGAAGGCCTCGTGCGACATCG 1025 Query 2874 TGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGAGGCGA 2933 || || ||||| || || || |||| ||||| ||||| ||||| | ||| | Sbjct 1026 CCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCATCGCACTGGCCA 1085 Query 2934 CTTTGCGCAGCTTC-TGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCG 2992 ||| | || | |||| | |||| ||| || | |||||||| || | ||||||| Sbjct 1086 GCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAGTAGAAGTCGCCG 1144 Query 2993 TTATGGCTCTGCGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTG 3052 | || |||||| || || ||| |||||||| || || ||||||| |||||||| Sbjct 1145 TGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCGGCGCCGTTCCAC 1204 Query 3053 CCGATGACAATCGGGTCGCCAGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATG 3112 ||| || ||||| ||||||||||||| ||| | ||| || | || |||| Sbjct 1205 AGCTTGATGTTC---TCGCCCTTCAGGTCGACGTCGACCTCTTTCGCGAAGTCGACGATG 1261 Query 3113 TATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCG 3172 || |||||| || ||||||| || ||||||| |||| || ||| ||| Sbjct 1262 TAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGCTTGTT-GCGCCC 1320 Query 3173 GTCTTGAGCGCGCG-CAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCG 3231 |||| ||| || ||||| |||||||| |||||||| | ||||| || ||||| || Sbjct 1321 CTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCACCGATCTGCCG 1380 Query 3232 GGATTTGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTA 3291 | ||| || || |||| | || | | | | ||| | | |||| | | ||| | Sbjct 1381 CGCTTTCAGGATGGCGCGCAGGCGCT--GGTACTGCTGATC-GAACCAGTTCTGATGGAA 1437 Query 3292 TTCGAA---AGACTGGTCGAAGAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAA 3348 ||| |||| | || || | ||||||| |||| || ||||| Sbjct 1438 AGGGAAGTTCGACTCG-CGCAG--CTTGGTTTCCAGCAGCGCGATCTGGTCGGCGCTG-- 1492 Query 3349 AAAGTTCTTT----TTCGGCCTCTTACGCTCCCCCTTG---TTACGGTTGGCAACGTTGG 3401 ||||| || || || ||| |||| | | | || || || | ||| | Sbjct 1493 --AGTTCGTTGCGCTTGGG---CTTGCGCTTCGGCGCGGCATTGCGCGCCGCGATGTTCG 1547 Query 3402 GGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAA 3461 | || | ||| | ||| |||||||| ||| | |||||||||| ||||| | Sbjct 1548 GATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCCGTGCGCTCCA 1607 Query 3462 TCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCGCCTGACTTTTGCGGCTTGGCGA 3521 ||||||||| || ||||||||||| ||| |||||||||| | ||| | || ||| || Sbjct 1608 GCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCCGTCTTCAGGA 1667 Query 3522 TGAGCTGAATCAGGCGCGCCTCAAG 3546 | ||||| ||||| | | ||||||| Sbjct 1668 TCAGCTGGATCAGCCTCACCTCAAG 1692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97885737644788