Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq19355 149 1e-31 seq12446 113 1e-20 >seq19355 Length=665 Score = 149 bits (164), Expect = 1e-31 Identities = 254/366 (69%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 1978 CGACGCGCTCGTAGACGCGGACGTACGACTTGCTACCGATCACCTGCAGTGCTTCGCCGA 2037 || |||||||||||| || || || | |||||| || | |||| || || |||| || Sbjct 600 CGTCGCGCTCGTAGAACCGCACATAGGTCTTGCTGCCCACCACCGTCACCGCGTCGCTGA 541 Query 2038 TGGCTCGCATTGCCTCCAGCCAGCGCGGATCGGTGATGTCCAATCGGCGCAGCGCGAGCA 2097 |||| ||| |||| | ||||||||||||| || | | || |||||| ||||| Sbjct 540 TGGCCTTCATCGCCTGCTGCCAGCGCGGATCATCGAACTTGAGGCGATGCAGCGAGAGCA 481 Query 2098 CGCGGCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAACGCCTGCGTGACGATCGCCT 2157 | |||||| ||||| ||| |||| | | | || || |||| | | Sbjct 480 CCTCGCCGGTCTTGATGCTGCCGTCCTGGCCCACCTTGAAGGCGCTATTGACCAAGGTGC 421 Query 2158 GGATTTCGGGGCGTGCGTCCGTCG-TCCAATCGCGAAGGCACTCGTCGATCATCGACTTC 2216 | | ||||| || | | || ||| |||| ||| |||||||| ||||| | | ||| Sbjct 420 GCAGTTCGGCTCGGGAG-CCTTCGGTCCAGTCGTTCAGGCACTCATCGATGAGGGCCTTG 362 Query 2217 GCGGCCTGCAAGCGTTCATCGAACGCGATGCGGTCTTGGATGGCACGCTGGATGCGGTAG 2276 || ||||||| ||| || ||||| ||| | ||| ||| ||| ||| |||| |||| Sbjct 361 GCCGCCTGCAGGCGCTCGTCGAATTGGATACTGTCCTGGCAGGCGCGCAGGATCTTGTAG 302 Query 2277 CGGCCGTCGAACGAGTACAGGGTGACGTTGCCCTTCTTGCCGCCAACCTTCGAGCCATAC 2336 ||||||||| | | ||||||| | ||||||||||| | |||||| | || | ||| ||| Sbjct 301 CGGCCGTCGTAGGTGTACAGGCTCACGTTGCCCTTGTCGCCGCCGATTTTGGCGCCGTAC 242 Query 2337 TCCTCG 2342 | |||| Sbjct 241 TGCTCG 236 >seq12446 Length=1343 Score = 113 bits (124), Expect = 1e-20 Identities = 255/381 (67%), Gaps = 33/381 (9%) Strand=Plus/Minus Query 3452 CCATGTCAGACTCCCTTGATCACGTCGGCGGTGACGACCGGCACGCCCAGGCCCGCGGCG 3511 |||| ||| || ||| | ||||||||||||||| ||||||||||||| | |||||| Sbjct 356 CCATCTCACACCCCCCGCACGACGTCGGCGGTGACGGTCGGCACGCCCAGGTCAGCGGCG 297 Query 3512 AGATTCATCGCGGCCGTCAGGAGGTTTCCGACCGCGAGCGGGTACAGCAGCGACACCGTT 3571 | ||||||||||| || || ||| ||| || ||||| || |||||||| || Sbjct 296 CGGTTCATCGCGGCGGTGAGCGCGTTCTGGACGGCCAGCGGATAGAGCAGCGAGCCC--- 240 Query 3572 TCGGCACGATCGCGTCGCGTGCTGGTCATCGTGAGCCGAGTGCGCAGCGCGTCGACGCCG 3631 |||| || |||| | || | || ||| ||||||||||||| | || Sbjct 239 ---GCAC---CG---CGCGAGGGAACCAGCTTG-GCC-----CGCAGCGCGTCGATGGCG 195 Query 3632 CTTGCGTCGATCACGTCGCCGACCGGCTTGTCGAGACGGCCGAACTTGAACCGG------ 3685 || || | ||| | | | | |||| | || || |||||| ||| Sbjct 194 CTCTGTTCCACCACCTTGTCCAGCGGC------ACCTGGGCGCGCTTGAAGCGGTGCGCC 141 Query 3686 AGGTATTCGTCCAGGCGCGGGCCGTCGAGCGGGGCCAGCTCGACCATTTCGCATCGCTGC 3745 ||||| || ||| || ||| ||||| | |||| || ||||| ||||| Sbjct 140 AGGTAGGCGCCCA---GCTCATTGTCCAGCGGCGGCAGCGTGATGATTTCAATGCGCTGT 84 Query 3746 ACGACTTCCCGGACGTCCTGGTTGCGCTCGGACAGCTTGACCTTCAGCTCCGGCTGGCCG 3805 || ||||| || || ||| ||||| | ||||| ||||| || |||||| ||||| ||| Sbjct 83 ACTACTTCGCGCACCTCCGGGTTGTGTTCGGAGAGCTTCACGCCCAGCTCGGGCTGTCCG 24 Query 3806 ATCAGGATGATGGACAGCAGC 3826 |||||||| | ||||||||| Sbjct 23 ATCAGGATCACCGACAGCAGC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117438572094260