Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq5 242 1e-59 >seq5 Length=40538 Score = 242 bits (268), Expect = 1e-59 Identities = 614/914 (67%), Gaps = 40/914 (4%) Strand=Plus/Minus Query 26128 TTTCATGGCGTCGAGCAGGATGTCCTGCACGGCGCGCTTCGTTTCGCGGCGCTCGACGAC 26187 |||||| || || ||||| |||||||| || | ||||| | |||||||| | | || Sbjct 20077 TTTCATTGCTTCAAGCAGAATGTCCTGAACTTCCCGCTTTGACTCGCGGCGTGCCATAAC 20018 Query 26188 GTCCTCGTCGATCGTGTCGCGC-GCGATGATCGGGTAGATGAAAACGGGGCGGCGGTGGC 26246 || |||| || | ||| || | || | | || || || || ||| || | Sbjct 20017 AAGTTCATCGACAGTACC-CGCAGCAACAATGTGATGAATAAACACCGGTCGGTTATGTC 19959 Query 26247 CGGCCTGCAGCTGG-CGCACGGGTCCGATCCGCTCGACGATCTGCAGGTATTCCTCGAGG 26305 |||| || |||| | || || ||||| ||||| || || ||| | || || || || Sbjct 19958 CGGCTTG-AGCTTGTCGAGTCGGGCCGATACGCTCAACAATTTGCTGATACTCTTCAAGA 19900 Query 26306 TTCCACCAGTGGCCGAAGACCGCAAGGATGTTGCCGCCGTCCTGCAGGTTCAGGCCGTGG 26365 ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||| Sbjct 19899 TTCCACCAGTGACCGAATACTGCAAGGATATTGCCGCCGTCCTGCAGGTTCAGACCGTGA 19840 Query 26366 CCGGCGCTGGCCGGGTGCGCGAACATCACCGGGATCTTGCCAGCGTTCCAGTCGCGGATC 26425 |||||| || || || ||||||| || |||||||| || ||||||||||||||||| Sbjct 19839 CCGGCGGATGCTGGATGTGCGAACAGAACAGGGATCTTTCCGGCGTTCCAGTCGCGGATA 19780 Query 26426 GTCTGCGGGTTCTGGTCGAGCTGGCGGCCGCGCGGGAACGCGCGCTGCAGCCGCGCGAGA 26485 |||||||| | || || || || || |||||| || ||| || ||||||||| Sbjct 19779 GTCTGCGGATCAGAATCCAGGTGACGACCTTTCGGGAATGCACGCATCAACCGCGCGAGG 19720 Query 26486 TCCGACTTGAAGTGGTAGGCCACGAGCACGGGCATGCCGGCCGCTTCCTCGACGATTTCC 26545 || |||||||| || || || || ||||| ||||| ||||| ||||| | | ||| || Sbjct 19719 TCTGACTTGAAATGATACGCAACCAGCACCGGCATACCGGCAGCTTCTT---CAATTACC 19663 Query 26546 ---TCGAGCGCCTGCAGTTTCAGGTCGTGCACCTCGTGCCACGGTGCGGTGTCGCTGCCG 26602 || || |||||||| || ||| || || | | || | || || ||| Sbjct 19662 GATTCCAGTGCCTGCAGCTTTGCGTCATGTACTT-------CCGTCCAGTTTC-CTG-AT 19612 Query 26603 TCGTCCTCCTGCTTGTAGACGGCGCCGTTCGCGAGCTGCAGGCATTTCATCGTCTTGCTC 26662 || || | || | || |||||||| ||||||||||| || ||||| ||||| Sbjct 19611 TCATCAAC------ATACGCAGCCCCGTTCGCCAGCTGCAGGCACTTGATCGTTTTGCTG 19558 Query 26663 GCCGCGTTCATGGCCTCGATCGGGCTG-TCGTCGATCTCCATGAACATCTGCCGTTCCAT 26721 || || | || |||| | || || || |||| | ||||||| | |||||||| Sbjct 19557 GCAGCACCGAACGCTTCGA-CTTCATGTTCATCAATCTGCGTGAACATTTCTCGTTCCAT 19499 Query 26722 GTCGCGATACAGCCGTCGCGCGGCCGCGGGCAGCTCGACATAGACCGGGCGCACGATCGG 26781 || || || | | || ||| || |||| ||||| || | ||| ||||| Sbjct 19498 TTCCCGGTATATCTGTTTTGCGCGTGCCGGCATTTCGACGCGGATCACATTCACAATCGG 19439 Query 26782 CTCGTCCAGGTCGAACCAGTCGGCCGGGTCGAGCGAGATCGTGCAGTCGGCGAGCGCCTT 26841 ||| | | || ||| | || || ||| || ||| | |||| ||| | Sbjct 19438 CTCATTGATGTTGAAATAATCCCGCGCGTCAAGGCTGATACAGATGTCGCGCAGCTTGTC 19379 Query 26842 CTGAATTTCATCCTGCGCGTGCGCGAGCGGGCGCGT-CTGCCGGTA---GCCGTTG-CCG 26896 ||| || | |||||||| || | | ||| || ||| | | ||||||| || Sbjct 19378 CTGTATCTGTTCCTGCGCAAACGGCAAC-GGCTTGTACTGAGTGAATCCGCCGTTGTTCG 19320 Query 26897 CCGGGCACCGACTGGAACCAGCGTTCCTCAAATGCCGAGAAGCTGCGCCCGAGTCGCTGG 26956 | | || ||| |||||||| || || || | | || || || ||| Sbjct 19319 C----AATCGCCTGAAACCAGCGCGACTGGAAAGCGTTATACGTCCGGCCAAGCCGCACA 19264 Query 26957 CCGCCGTCGACGAACCACTGC-TGGCCCCACAGATCCTGCAGGCCGTTCGGCGACGGTGT 27015 || || | ||||| ||| || |||||||||||||||| ||||||||| |||||||| Sbjct 19263 CCCTGATCAAGAAACCA-TGCTTGCCCCCACAGATCCTGCAAGCCGTTCGGTGACGGTGT 19205 Query 27016 GCCGGTGAGGTTCA 27029 ||||| | ||||| Sbjct 19204 ACCGGTCA-GTTCA 19192 Score = 91.5 bits (100), Expect = 4e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 6390 CTGCGGCATGCTCGAAGCGTACGCGGAAGTCGACAAGGCGCTGGCCGATCTGAACGGCAA 6449 |||||| ||| | ||||||||| | |||||||| |||| |||||||| |||||||| || Sbjct 40427 CTGCGGTATGTTGGAAGCGTACTCTGAAGTCGATAAGGATCTGGCCGAACTGAACGGTAA 40368 Query 6450 CACCGCGGCATTCCGTCTGTCCGAAGAC 6477 |||||| |||||| ||||||||||| Sbjct 40367 TACCGCGCAATTCCGCTTGTCCGAAGAC 40340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135567811758062