Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq19355 190 5e-44 seq18505 80.6 7e-11 >seq19355 Length=665 Score = 190 bits (210), Expect = 5e-44 Identities = 414/610 (68%), Gaps = 11/610 (2%) Strand=Plus/Minus Query 2577 CATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACCC 2636 ||||||| |||||||| | || || | || | |||||||| | | || | | Sbjct 651 CATGTCAGACCCCCGCCACGTCGAGGGAGATCGGCTGGTACTGGCCCCG---CGCGTCGC 595 Query 2637 GCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCCT 2696 |||| | || ||||| || | |||| ||| ||| ||| || || |||| |||||||| Sbjct 594 GCTCGTAGAACCGCACATAGGTCTTGCTGCCCACCACCGTCACCGCGTCGCTGATGGCCT 535 Query 2697 GCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTGC 2756 ||| || ||||||| || ||||||| || ||||| |||| | ||||| || Sbjct 534 TCATCGCCTGCTGCCAGCGCGGATCATCGAACTTGAGGCGATGCAGCGAGAGCACCTCGC 475 Query 2757 CGGTACGGATGTTCCCAGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACCT 2816 |||| |||| | || | ||| |||| ||| || |||| || ||| | | Sbjct 474 CGGTCTTGATGCTGCCGTCCTGGCCCACCTTGAAGGCGCTATTGACCAAGGTGCGCAGTT 415 Query 2817 CCGCGCGAGCACCTTCCGTCCATTCGTGGAGGCACTCGTCGATCAGCGCCTTGGCCGCCT 2876 | || || | ||||| ||||| |||| |||||||| ||||| || ||||||||||||| Sbjct 414 CGGCTCGGGAGCCTTCGGTCCAGTCGTTCAGGCACTCATCGATGAGGGCCTTGGCCGCCT 355 Query 2877 GCAGGCGCTCGTCGAAGGCGATGTTGT-CGGCCATGGCCCGAATGACCTTGTAGCGACCG 2935 |||||||||||||||| ||| ||| | | || ||| || | || ||||||||| ||| Sbjct 354 GCAGGCGCTCGTCGAATTGGATACTGTCCTGGCA-GGCGCGCAGGATCTTGTAGCGGCCG 296 Query 2936 TCGAAGCTGACCAGAGAGGCGTTGCCCTTCTTGCCTCCTACCTTCGCCTGGTACTGCTCG 2995 ||| || || ||| |||||||||| | ||| || | || || |||||||||| Sbjct 295 TCGTAGGTGTACAGGCTCACGTTGCCCTTGTCGCCGCCGATTTTGGCGCCGTACTGCTCG 236 Query 2996 GCCGACAG-GGTG-ATGAAGGCTTCGATATCGCCGAATGTTGCCAGTTTGAAATCCAGCA 3053 | || | | || | ||||||| | || || |||| || || ||||| ||| Sbjct 235 --CCACTGAGCTGCACGAAGGCTGCAATGTCAGCGAACGTGTCCGCCTTGAAGGTGCGCA 178 Query 3054 ACGCCTTGTTCAG-AGCCTTCCCCTTGGCAACGATCTCCTGCACAAGGCGGTCGCGCTCC 3112 | | | ||| || | | | | | |||||||||| || |||||||| || Sbjct 177 GTTCTTCGCGCAGCTGCAGGGCGCGCTGGATC-TTCTCCTGCACCAGCTGGTCGCGCGCC 119 Query 3113 AGGTCAATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTAC 3172 || || || ||||||||| | | || || ||||| || || || |||| |||||| Sbjct 118 AGATCGATCGGCTTGATCTGTGCCTCGGGCACCAGCCGACCGTTACGGTCCTCGCGGTAG 59 Query 3173 CCGGCGGGAA 3182 ||| |||||| Sbjct 58 CCGTCGGGAA 49 >seq18505 Length=709 Score = 80.6 bits (88), Expect = 7e-11 Identities = 145/207 (70%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 20789 GTTCGCCGAAGGCCTGGTCAAGGCCGGCCGCCTGCTGCCGCGCCAGAAGGCTCCGGTGAT 20848 |||||||||||||||||| |||| ||| ||||||| || ||| || | | ||| | Sbjct 252 GTTCGCCGAAGGCCTGGTGAAGGAAGGCAAGGTGCTGCCCCGTCAGCAGCCGGCTGTGGT 311 Query 20849 CGAGCTGCTGGTGAGTCTGCCCGTCGACA---CCCCCCTGGAGTTCGCCGAGGGCG--AC 20903 ||||||||| || | ||| | | || || || | ||||||||||||| || Sbjct 312 TGAGCTGCTGTTGGCCCAGCCGGATGGCAAGGAGCCGCTCAACTTCGCCGAGGGCGAAAC 371 Query 20904 GGCCAGGTCACAAAGCCGGCGGCCGAGGTGCTGCGC-AGCTTGCTGGCCGAACTGCCCAA 20962 | | ||| | |||||||||| |||||| ||| ||| ||||| | |||||||| Sbjct 372 GAC--GGTGTCCAAGCCGGCGGAGTCGGTGCTTCGCGAGC-TGCTGATCAGCCTGCCCAA 428 Query 20963 ACAGGTGGACTTTTCCGAGAAATCCGG 20989 ||||||||| ||||| ||||| Sbjct 429 GGCGGTGGACTTCAGTGAGAAGTCCGG 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122848232279806