Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq9234 408 1e-109 seq17740 275 2e-69 seq15326 152 1e-32 >seq9234 Length=2011 Score = 408 bits (452), Expect = 1e-109 Identities = 1064/1609 (66%), Gaps = 46/1609 (3%) Strand=Plus/Minus Query 2866 CGAAAAGTGGAAGGACGCAACGCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCAT 2925 ||| || ||| | ||||| ||| |||| ||| || | | |||| || ||| | | Sbjct 1738 CGACAAATGGGATGACGCGCAGCCGCTCGATCGCGTCAATGGCGCGCTTGAGGTGAGGCT 1679 Query 2926 GATGGTGTTGATCGCGAAGGAGAAGAAGGACGGTGCGGACTACAAGGAAATCGACCTGCT 2985 ||| | ||||| |||| | ||||| ||| | ||||||||||| || ||||| || Sbjct 1678 GATCCAGCTGATCCTGAAGACGGAGAAGACCGGCGGCGACTACAAGGAGATTGACCTTCT 1619 Query 2986 CGGCCGCCAAGTCGAGCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATC 3045 || || || | ||||| |||||||| |||||| | |||| ||| ||| Sbjct 1618 GGGGCGGCAGCTGGAGCGCACGGCGCGCGTCGAGAAGTACCAGCAGACCGGGCGCGAAGG 1559 Query 3046 GGATCTGAACCCGAAGATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCC---CG 3102 ||| |||| ||||| || ||| ||||||| |||| ||||| ||| |||| || Sbjct 1558 GGACTTGAATCCGAACATCGCGGCGCGCAATGCCGCGCCGAAGCGCAA---GCCCAAGCG 1502 Query 3103 TAACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGC---GTTCCGCGATTCGCT 3159 |||||| |||||| ||| ||| | |||| | | ||| | | | ||||| ||| Sbjct 1501 CAACGAACTCAGCGCCGACCAGATC--GCGCTGC-TGGAAACCAAGCTGCGCGAGTCGAA 1445 Query 3160 GTTCGACT---ATCAGAAAGTCTGGTATCGGAACGGCGAT--CAGCGCACGCGCAACATC 3214 ||| | ||||||| ||||| ||| | | || | |||||| |||| |||| Sbjct 1444 CTTCCCTTTCCATCAGAA---CTGGT-TCG-ATCAGCAGTACCAGCGCCTGCGCGCCATC 1390 Query 3215 CTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCC 3274 |||||| ||||||||||||||||||| | ||||| ||||||||||||| || || | Sbjct 1389 CTGAAAGCGCGGCAGATCGGTGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCT-CGGC 1331 Query 3275 CTCGACACCGAC-CGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTT 3333 | ||| | | || || | | ||| |||||||| ||||| ||||| ||| || Sbjct 1330 CGCGAAAGAGGGGCGCAACAAGCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCAGTT 1271 Query 3334 CAAGCAG-TACATCACGCAGTTCGCGCGCGGGGCAGCCGACATCGAGCTCACGGGCGATC 3392 | |||| |||||| | |||||| | || |||| |||| || | |||||| Sbjct 1270 CC-GCAGCTACATCGTCGACTTCGCGAAAGAGGT---CGACGTCGACCTGAAGGGCGAGA 1215 Query 3393 CGATTATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGCACGAACGCGCGCACCGCGC 3452 || | || || |||||| |||| |||||| ||||| ||||| || || | Sbjct 1214 ACATCAAGCTGTGGAACGGCGCCGAGCTGATCTTCCTTGGCACCAACGCCATGACGGCCC 1155 Query 3453 AGTCGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGC 3512 || || |||||| ||||||||||||| |||| |||||||| || ||| | || Sbjct 1154 AGAGCTATCACGGCGACTTCTACTTCGATGAATTTTTTTGGGTCCCACGCTTCAGGCAGA 1095 Query 3513 TGAACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAGACGTACTTCAGCA 3572 | |||||| | ||| | ||||| |||||||| |||||||||||| || ||| | Sbjct 1094 TCAACAAGCTGGCCAGTGCGATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGA 1035 Query 3573 CGCCGTCCAGCG-TCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGC 3631 |||| || ||| | |||||||||| | || |||||||| ||||| || |||| Sbjct 1034 CGCCCTCG-GCGATGTCGCACGAGGCCTTCGGGTTCTGGACCGGCGACGACCGGAACAAG 976 Query 3632 GGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCG-CGG 3690 |||||||| || | | ||| |||||||| |||||| || ||| | ||| ||| Sbjct 975 GGCCGCGCGAAAAAGGACCACGTCCGCATCGACACCAGCCACAAGATGCT-GCGCGGCGG 917 Query 3691 CATGTTGTGCGAGGACGCGCAG-TGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGG 3749 |||| || || || |||| ||||| | ||||| || ||| || || | ||| Sbjct 916 CATGCTGGGCCTCGAT-CGCAAATGGCGCGACATCGTCACGGTGGAAGACGCCGTCGCGA 858 Query 3750 GCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCG 3809 |||| ||| |||||||| |||| |||||||||| || |||||| ||| || |||| Sbjct 857 TGGGCTTCGATCTGTTCGATATCGCCGAGCTGCGCGAGGAATACAGCCTCGACGAGTTCG 798 Query 3810 CGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACC 3869 |||| ||| |||||||||||||||||||||| ||||| |||||| |||| || | Sbjct 797 CGAACCTGTTCATGTGCCAGTTCATCGACGACAGCTTGTCGCTGTTCACGCTGGCGCAGA 738 Query 3870 TGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNN 3929 |||| |||||| ||||| ||||| ||| | | |||| || || Sbjct 737 TGCAGGCTTGCATGATCGACAGCTGGGA--GATGTG-GAGCGACGTCAAGCCGCTTTGGA 681 Query 3930 NNNNNNCGTTCG---GCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCG 3986 | | || || || |||||||||||||||||| || | || ||||| Sbjct 680 TTCGGCCCTACGCTCACTTTC---CGGTGTGGGTCGGCTACGACCCATCAGACAAGGGCG 624 Query 3987 ACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGC 4046 | | || | || | |||||| | | Sbjct 623 ATGCCGCTGCACTGGTGGTGGTCGCGCCGCCGCGCGTGCCAGGCGGCAAGTTCCGCATCC 564 Query 4047 TCGAACGTCATCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCGATCGAGGCGA 4106 | | || | |||||| ||| ||||| |||| ||||||| ||| ||| || Sbjct 563 TACATCGCGAGCAGTTCAAGGGCTCGGACTTCGAGGCGCAGGCCGAGGCCATCCGTCGGA 504 Query 4107 TCACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCG 4166 |||| |||| |||||||||| | |||| ||||||| || ||| |||| |||| Sbjct 503 TCACCCAGCAATACAACGTCGTGCATATCGGCATCGACAAGACCGGCCTGGGTGCTGGCG 444 Query 4167 TCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCT-GAACTACTCGCCCGAG 4225 | | |||| |||| |||||||| || | | | | ||| | ||| |||| Sbjct 443 TGTTCCAGATCGTCGAGAAGTTCTTTCC-CCAGGTGAAGGGCTACCAGTACAGCATCGAG 385 Query 4226 GTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTC 4285 ||||| ||||| ||||| |||| || ||| ||| || || || ||| | ||| Sbjct 384 GTGAAGCAGCGCCTGGTGCTGAAGGCGCAACAGGTCATCCACAAGGGGCGACTGGAGTTC 325 Query 4286 GACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGATCAAACAGACGATGACGGCG 4345 || || || |||||||| | || ||||| |||||||| ||||| | | | || || Sbjct 324 GATGCTGGATGGACCGACATCGCCGCGGCCTTCATGGCCATCAAGCGCGTGCTCACCGCC 265 Query 4346 AGCGGCCGTCAGGCGACCTACACCGCCGGCCGCACCGACGAGACGGGCCACGCCGACCTG 4405 |||||||| | ||||||| | | |||||| |||| | ||||| ||||| || || Sbjct 264 AGCGGCCGAAACATGACCTACGACTCGGGCCGCTCCGAAGTCACGGGACACGCGGATCTT 205 Query 4406 GCGTGGGCGTGCCTGCACGCGATCGACCGCGAGCCGCTCGCCGGCGGCG 4454 |||||||| |||||||| ||||| ||| | |||||||||| || Sbjct 204 GCGTGGGCAACGATGCACGCGCTCGACAACGAATCACTCGCCGGCGACG 156 >seq17740 Length=755 Score = 275 bits (304), Expect = 2e-69 Identities = 525/753 (70%), Gaps = 23/753 (3%) Strand=Plus/Plus Query 4578 CTTCACGTTCGACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGA 4637 ||||| |||| ||| ||| ||| |||| ||| | || | || || |||||||| Sbjct 1 CTTCAGCTTCGGCGACCCGGAGCCTGTCAG---CCGTATCCAGCTGCTGGACTACGTCGA 57 Query 4638 GTGCTGGTCGAACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATC 4697 || || ||||| ||||| ||||||||| | | | || |||||| | Sbjct 58 AAGCATGTTCAACGGTCGATGGTATGAGCCGCCGCTGCCGTGGGATGGATTGGCGAGCGC 117 Query 4698 GTTTCGCGCGAGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTC 4757 ||| |||||| |||||||| |||| ||| | ||| | ||| ||| |||| | | Sbjct 118 GTTCCGCGCGTCGCCGCACCATGGCTCTGCGATCTTCCTGAAGCGCAACCTGCTCAAGGC 177 Query 4758 GACATTCCGCCCGCA-CCGCTGGCTGTCGCGGCACG-CGTTCGAGCGGTGGGCGCTCGAT 4815 || ||| ||| || |||| |||||||| | | || |||| | | |||||| || Sbjct 178 GATGTTCGTCCCCCATCCGC-GGCTGTCGAG-CGCGACGTTTGGGGCCATGGCGCTGGAC 235 Query 4816 TTCCTGACGTTCGGCAACGGCTATCTGGAAC-GCCGC-CGCAA-CATGGTCGGCGGCACG 4872 ||||| |||||||| | ||| | || | ||||| |||| || || |||| | || Sbjct 236 TTCCTCGTTTTCGGCAATGCCTACGTCGAGCAGCCGCGCGCATTCACGG--GGCGCC-CG 292 Query 4873 CTGCGGCTTGAGCCCGCGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTCAACGGCTTC 4932 ||| ||| ||| |||||| || |||||| || ||| | || | | | Sbjct 293 CTGGAGCTGCAGCACGCGCTGGCCAAGTACACGCGCCGCGGGCAGGAGCCGGGCCGGTAT 352 Query 4933 GTGTACGTGAACGGCTGGCAGGAGCGGCACGAGTT-CGAGCCCGACAGCGTGTTCCAGCT 4991 | | |||| |||||||| | || ||||||||| | |||| | || ||||||| || Sbjct 353 TTCTTCGTGCGCGGCTGGCTGCAGGAGCACGAGTTTCCAGCCGGCTCGC-TGTTCCACCT 411 Query 4992 -CGTGCGGCCGGACATCAATCAGGAGGTCTACGGCCTGCCCGAGTATCTGAGCTCGCTGC 5050 || | || | || ||||||| ||| ||||||| |||||||||| | ||| |||||| Sbjct 412 TCGCGAGGATG-ACGTCAATCAAGAGATCTACGGTTTGCCCGAGTACATCAGCGCGCTGC 470 Query 5051 ACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCA 5110 | ||||||||||| ||||| | | || |||||||||| ||||| |||| ||||| Sbjct 471 AGTCGGCCTGGCTCAACGAGGCAGCCACCATGTTCCGGCGGAAGTACTACGCCAACGGGT 530 Query 5111 GCCACGCCGGCTTCATCCTGTACATGACCGACGCCGCGCAG--AAGCA-GGACGACGTGG 5167 ||||||||||||||||| ||| || | |||||| ||| |||| || ||||| || Sbjct 531 CGCACGCCGGCTTCATCCTCTACCTGTCGGACGCC---CAGGTCAGCACGGCCGACGCGG 587 Query 5168 ACAACATGCGCGACGCGCTGAAGAACGCGAAGGGGCCTGGCAACTTCCGCAACGTGTTCA 5227 | | ||||| ||||||||| || ||||| || ||||||||||||||| ||||| Sbjct 588 ATGCACTACGCGAGGCGCTGAAGGGGGCCAAGGGACCGGGCAACTTCCGCAACCTGTTCC 647 Query 5228 TGTACGCGCCGGGCGGGAAGAAGGACGGCATCCAGCTCATCCCCGTGTCCGAGGTCGCCG 5287 || |||| |||||||| ||| || ||| | |||| || || || ||||||||||| | Sbjct 648 TGCACGCCCCGGGCGGCAAGGCCGAGGGCCTAAAGCTGATTCCGGTCTCCGAGGTCGCGG 707 Query 5288 CGAAGGACGAGTTCTTCAACATCAAGAACGTGA 5320 | |||||||| ||| |||||| ||||||| Sbjct 708 CCAAGGACGACTTCGCGGCCATCAAAAACGTGA 740 >seq15326 Length=957 Score = 152 bits (168), Expect = 1e-32 Identities = 232/328 (71%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 2149 GCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCG 2208 || ||||| |||||| ||| ||||||||||| || |||| |||||| | || || ||| Sbjct 318 GCCGCGAACTGCAGCATTTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCG 259 Query 2209 ACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGC 2268 | ||||| |||| | || |||||||||| | || | |||| ||| || ||| | Sbjct 258 ATCAGATAGGCCTTGTCGGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATC 199 Query 2269 TTCTGGCGCTTCTTCGACAGTGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGC 2328 |||||||||||||| | |||| || |||||||| ||| |||||||||||| || Sbjct 198 TTCTGGCGCTTCTTGTTGATCGCGATCAGTTCGTCGGTGGGAGAGATCTGCGCATAGAGG 139 Query 2329 GCCATCTTCCCTTTCAGCGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCG 2388 || | ||| ||| || |||| |||| ||| | | ||| | ||| | ||||||| Sbjct 138 GCGAGCTT--CTTGGCGC-CGCCGATCTCGACCTCTTCGGTCTTGACCGCCAGCACGTCG 82 Query 2389 CCATACGCGCCGAACGGGTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCTCGACG 2448 |||||||||||||| ||||| | ||| |||| ||||||||| | | Sbjct 81 CCATACGCGCCGAA-------TTCGCTG--CTCGGGCTGTAGCCGCGGATGTGCTCCATG 31 Query 2449 TTCACGCGTGCGCCGTACAGCTTCGGGT 2476 |||||||| || ||||| | |||||| Sbjct 30 TTCACGCGGGCTCCGTAGACGGTCGGGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120288960755006