Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4269 140 2e-28 seq20389 104 2e-17 seq11176 102 5e-17 seq160 98.7 7e-16 seq6712 96.9 2e-15 seq3704 95.1 8e-15 seq11269 93.3 3e-14 seq1345 93.3 3e-14 seq18158 87.8 1e-12 >seq4269 Length=4205 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2859 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 2800 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2799 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2765 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 357 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||| ||| Sbjct 356 GGTGATATTTAGCTTTA 340 >seq20389 Length=619 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||| | Sbjct 397 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTAATTGTTTGCTATCGCTCTTGT 456 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 457 AGTCATATTTAGCCTTA 473 >seq11176 Length=1573 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| |||||||| ||||| ||||| || |||| || | || || || ||||| Sbjct 687 TCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 628 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | || | |||||| ||||| ||| ||| || ||||| Sbjct 627 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTT 568 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || |||||| | || ||||| | ||| || |||||||||||||| || || || Sbjct 567 TCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACA 508 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 507 AAAATCTGCAT 497 >seq160 Length=19552 Score = 98.7 bits (108), Expect = 7e-16 Identities = 76/89 (85%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||| |||||||||||| |||||||||||||||| || |||||||| Sbjct 4952 AAGCCC-TTCCCTTAGCTGTGGTTTCGTTAGATAGTAGATAGGGATAGTGGAAATCTCGT 4894 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGA 25985 |||||| |||||| ||||||| || |||| Sbjct 4893 TAATCCATTCATGTGCGTCACGAAATAGA 4865 >seq6712 Length=2860 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1864 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1923 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 1924 GCCCGTATTTAGCCTT 1939 >seq3704 Length=4711 Score = 95.1 bits (104), Expect = 8e-15 Identities = 70/82 (85%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 25915 TGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATG 25969 ||||||||||||||||||||| ||||||||| || |||||||||||||| ||| || Sbjct 1069 TGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGAAATCTCGTTAATCCATTCCTG 1128 Query 25970 CGCGTCACTAATTAGATGACGA 25991 | |||||| ||||| ||||||| Sbjct 1129 CACGTCACGAATTAAATGACGA 1150 >seq11269 Length=1554 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 936 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 995 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 996 GCCCGTATTTAGCCTT 1011 >seq1345 Length=8665 Score = 93.3 bits (102), Expect = 3e-14 Identities = 60/66 (91%), Gaps = 5/66 (8%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8124 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8065 Query 25957 TAATCC 25962 |||||| Sbjct 8064 TAATCC 8059 >seq18158 Length=729 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 ||| || || || ||||| || ||||| || ||||| | |||| |||||||||||| Sbjct 5 TAAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTG 64 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || || || | ||||||||||| || || || || Sbjct 65 AATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTT 124 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| || || || |||||| Sbjct 125 GCCCGTCAATGTTTTTACAAAAATTTGCATG 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334849378984253