Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11176 163 2e-35 seq18158 95.1 1e-14 >seq11176 Length=1573 Score = 163 bits (180), Expect = 2e-35 Identities = 166/214 (78%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || ||||||||||||||||| |||||| |||| ||| |||||||||| Sbjct 490 CGGAGGAATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGA 549 Query 25052 GTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 | | ||||| |||||||| |||| ||||||| | ||| ||||| ||||| |||| Sbjct 550 GGCTTCTGATACTATCGAAAATGTCA---AAGCAAAGATTCA-AGACAAGGAAGGCATTC 605 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||| || || ||||| | || ||||| ||||| || | || || | |||||| || Sbjct 606 CACCAGATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGT 665 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| |||||||| || ||||| ||||| || Sbjct 666 CCGATTATAATATTCAGAAGGAATCGACGCTGCA 699 >seq18158 Length=729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | ||| Sbjct 154 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 95 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| |||||||||||||| || || || || Sbjct 94 GACACAATCGAAAATGTAAAGGCCAAGATTCAG-GACAAAGAAGGGATCCCTCCAGATCA 36 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTA 25148 ||||| |||||||||| || || || ||| Sbjct 35 GCAGCGCCTTATTTTTGCTGGTAAGCATTTA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433201446963845