Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq9234 443 5e-120 seq9729 199 9e-47 seq17740 178 3e-40 seq15326 152 1e-32 >seq9234 Length=2011 Score = 443 bits (490), Expect = 5e-120 Identities = 1070/1605 (67%), Gaps = 38/1605 (2%) Strand=Plus/Minus Query 2854 CGAAAAGTGGAAGGACGCAACGCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTGCGCAT 2913 ||| || ||| | ||||| ||| |||| ||| || | | |||| || ||| | | Sbjct 1738 CGACAAATGGGATGACGCGCAGCCGCTCGATCGCGTCAATGGCGCGCTTGAGGTGAGGCT 1679 Query 2914 GATGGTGTTGATCGCGAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCT 2973 ||| | ||||| |||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 1678 GATCCAGCTGATCCTGAAGACGGAGAAGACCGGCGGCGACTACAAGGAGATTGACCTTCT 1619 Query 2974 CGGCCGCCAAGTCGAGCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATC 3033 || || || | ||||| |||||||| |||||| | |||| ||| ||| Sbjct 1618 GGGGCGGCAGCTGGAGCGCACGGCGCGCGTCGAGAAGTACCAGCAGACCGGGCGCGAAGG 1559 Query 3034 GGACCTGAACCCGAAGATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCC---CG 3090 |||| |||| ||||| || ||| ||||||| |||| ||||| ||| |||| || Sbjct 1558 GGACTTGAATCCGAACATCGCGGCGCGCAATGCCGCGCCGAAGCGCAA---GCCCAAGCG 1502 Query 3091 TAACGAAATCAGCGACGAACAGCACAAGCGCATCATCGAAGC---GTTCCGCGATTCGCT 3147 |||||| |||||| ||| ||| | |||| | | ||| | | | ||||| ||| Sbjct 1501 CAACGAACTCAGCGCCGACCAGATC--GCGCTGC-TGGAAACCAAGCTGCGCGAGTCGAA 1445 Query 3148 GTTCGACT---ATCAGAAAGTCTGGTATCGGAACGGCGAT--CAGCGCACGCGCAACATC 3202 ||| | ||||||| ||||| ||| | | || | |||||| |||| |||| Sbjct 1444 CTTCCCTTTCCATCAGAA---CTGGT-TCG-ATCAGCAGTACCAGCGCCTGCGCGCCATC 1390 Query 3203 CTGAAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCG 3262 |||||| ||||||||||||||||||| | ||||| ||||||||||||| || || Sbjct 1389 CTGAAAGCGCGGCAGATCGGTGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCTCGGC- 1331 Query 3263 CTCGACACCGAC-CGCAATCAGATCTTCCTATCGGCCAGCAAGGCGCAGGCGCACGTCTT 3321 | ||| | | ||||| || | ||| | ||||| ||||||||||| ||| || Sbjct 1330 CGCGAAAGAGGGGCGCAACAAGCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCAGTT 1271 Query 3322 CAAGCAA-TACATCACGCAGTTCGCGCGCGATGCCGCCGACGTCGAGCTCACGGGCGACC 3380 | ||| |||||| | |||||| || | || ||||||| || | |||||| Sbjct 1270 CC-GCAGCTACATCGTCGACTTCGCGAAAGAGGTCG---ACGTCGACCTGAAGGGCGAGA 1215 Query 3381 CGATCATCTTGCCGAGCGGTGCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGC 3440 |||| || || ||| || |||| |||||| || || ||||| || || | Sbjct 1214 ACATCAAGCTGTGGAACGGCGCCGAGCTGATCTTCCTTGGCACCAACGCCATGACGGCCC 1155 Query 3441 AGTCGTATCACGGCAACTTCTATTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGT 3500 || ||||||||| ||||||| ||||| |||| |||||||| || ||| | || Sbjct 1154 AGAGCTATCACGGCGACTTCTACTTCGATGAATTTTTTTGGGTCCCACGCTTCAGGCAGA 1095 Query 3501 TGAACAAGGTTGCGTCGGGCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCA 3560 | |||||| | || | ||||| |||||||| ||||||||||||||| ||| | Sbjct 1094 TCAACAAGCTGGCCAGTGCGATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGA 1035 Query 3561 CGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCG 3620 |||| ||| | |||||||||| |||| |||||||| ||||| || |||| | Sbjct 1034 CGCCCTCGGCGATGTCGCACGAGGCCTTCGGGTTCTGGACCGGCGACGACCGGAACAAGG 975 Query 3621 GCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCG-CGGC 3679 ||||||| || | | ||| |||||||| |||||| || ||| | ||| |||| Sbjct 974 GCCGCGCGAAAAAGGACCACGTCCGCATCGACACCAGCCACAAGATGCT-GCGCGGCGGC 916 Query 3680 ATGTTGTGCGAGGACGCGCAG-TGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGG 3738 ||| || || || |||| ||||| | ||||| || ||| ||||| | ||| Sbjct 915 ATGCTGGGCCTCGAT-CGCAAATGGCGCGACATCGTCACGGTGGAAGACGCCGTCGCGAT 857 Query 3739 CGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGC 3798 |||| | | |||||||| |||| |||||||||| ||||||||| ||| || ||||| Sbjct 856 GGGCTTCGATCTGTTCGATATCGCCGAGCTGCGCGAGGAATACAGCCTCGACGAGTTCGC 797 Query 3799 GAACCTGCTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCT 3858 ||||||| | |||||||| ||||||||||| ||||| |||||| |||| || | | Sbjct 796 GAACCTGTTCATGTGCCAGTTCATCGACGACAGCTTGTCGCTGTTCACGCTGGCGCAGAT 737 Query 3859 GCAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTGCT 3918 ||| |||||| ||||| |||||| ||| | | |||| | |||||| | | Sbjct 736 GCAGGCTTGCATGATCGACAGCTGGGAG--ATGTG-GAGCGACGTCAAGCCGCTTTGGAT 680 Query 3919 GCGTCCGTTCGGTCATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACTC 3978 || || | || ||| |||||||||||||||||| || | || |||||| | Sbjct 679 TCGGCCCTACGCTCACTTTCCGGTGTGGGTCGGCTACGACCCATCAGACAAGGGCGATGC 620 Query 3979 GGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCGA 4038 || | || | |||||| | || | Sbjct 619 CGCTGCACTGGTGGTGGTCGCGCCGCCGCGCGTGCCAGGCGGCAAGTTCCGCATCCTACA 560 Query 4039 ACGTCACCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCAC 4098 || | |||||| ||| ||||| |||| ||||||| ||| ||| |||||| Sbjct 559 TCGCGAGCAGTTCAAGGGCTCGGACTTCGAGGCGCAGGCCGAGGCCATCCGTCGGATCAC 500 Query 4099 GCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTA 4158 |||| |||||||||| | |||| ||||||| || ||| |||| ||||| | Sbjct 499 CCAGCAATACAACGTCGTGCATATCGGCATCGACAAGACCGGCCTGGGTGCTGGCGTGTT 440 Query 4159 CCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCT-GAACTACTCGCCCGAGGTGA 4217 |||| |||| |||||||| || | | | | ||| | ||| |||||||| Sbjct 439 CCAGATCGTCGAGAAGTTCTTTCC-CCAGGTGAAGGGCTACCAGTACAGCATCGAGGTGA 381 Query 4218 AAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACG 4277 | ||||| ||||| |||| || ||| ||| || || || ||| | ||||| | Sbjct 380 AGCAGCGCCTGGTGCTGAAGGCGCAACAGGTCATCCACAAGGGGCGACTGGAGTTCGATG 321 Query 4278 CGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGCG 4337 | || |||||||| | || ||||| |||||||| ||||| | | | || || |||| Sbjct 320 CTGGATGGACCGACATCGCCGCGGCCTTCATGGCCATCAAGCGCGTGCTCACCGCCAGCG 261 Query 4338 GCCGCCAGGCGACCTACACCGCCGGCCGTACCGAGGAAACCGGCCACGCCGATCTGGCGT 4397 |||| | ||||||| | | ||||| |||| | || || ||||| ||||| |||| Sbjct 260 GCCGAAACATGACCTACGACTCGGGCCGCTCCGAAGTCACGGGACACGCGGATCTTGCGT 201 Query 4398 GGGCCTGCCTGCACGCAATCGACCGCGAGCCGCTCGCCGGCGGCG 4442 |||| ||||||| ||||| ||| | |||||||||| || Sbjct 200 GGGCAACGATGCACGCGCTCGACAACGAATCACTCGCCGGCGACG 156 >seq9729 Length=1888 Score = 199 bits (220), Expect = 9e-47 Identities = 490/731 (67%), Gaps = 29/731 (4%) Strand=Plus/Plus Query 20767 GATGCCATACGCGCCCTTGTTCAGCTTCTCGTTCTTGTGGATCTGCTGGCTCTGCATGTA 20826 |||||||| || || ||| |||||| |||||||||||||||| | || ||||| ||| Sbjct 299 GATGCCATCAGCACCGGCGTTTAGCTTCGCGTTCTTGTGGATCTGGTCGCGCTGCAGGTA 358 Query 20827 CATCGTCGAGAACAGATTCGCGGCCGTCCGATTCGTGAAGATCGTCGAAATCATGTCCTT 20886 |||| | |||||||||| || || || || | ||||| | ||| |||| Sbjct 359 CATCTGGGCAAACAGATTCGACGCAGTGCGGTTGCTAAAGATGCTGCCGATCGTGTCGAG 418 Query 20887 CACTTTGTCGGGGTCCGTGACGCCCTTCTTCGCCATCTGCGGCAGCAGCACCTTTTCGAG 20946 |||| || || |||| |||||| | || || || || |||| ||| | Sbjct 419 GACTTGCTCCTTTTCAGTGATGCCCTTTTGTTTCAAAGCAGGTAGAAGAACCTGTTCCAT 478 Query 20947 CCATTCGAGCGGCGACGCCTTGAACAGATCGCCGCCGAGCAGCGCGCCCGGCTT--GATC 21004 |||||||| | | | ||| || |||| || |||||||| || || || Sbjct 479 CCATTCGAACTGGTTGGTTCGGAATAGCTCGCTCCCCTTGAGCGCGCCAGGGTTCAGAAA 538 Query 21005 CGCT---TGATCATGCCGATTTTGTTGTACTCGACGTTCGTCTTGTC---GAGCAGCCCG 21058 ||| ||| || ||| |||| | | | |||| | ||| || || ||| Sbjct 539 CGCCAACTGACCA-GCC----TTGTCATGCGACAGCTTCGACGGGTCTCCGATCAACCCC 593 Query 21059 AGCTTCATCATCTCCTGCGCGGCCCGCACGGTCGTCTTGCCCTGGTAGACGTTGCTATAT 21118 ||| | || | || || || || ||| ||||| || ||||||| ||| ||| Sbjct 594 AGCGCCTCGATGTTCTTGGCTGCTCGTTTGGTGGTCTTTCCTTGGTAGAGGTTCTGGTAT 653 Query 21119 GCGGACATGAGCCCGGTGCCGACCTGGTGCCCGCCCATTTC-CTGAATGAGCGGCTCCAT 21177 ||||||||| ||||||| || ||| ||||||||| || |||| |||| | ||| | Sbjct 654 GCGGACATGGTGGCGGTGCCAACTCGGTTCCCGCCCATCTCGCTGA-TGAGTGCCTCGAG 712 Query 21178 CTGGTAGTAGAACGC---GTCCT---GGCGCATCTGCTTTGCAGCGACGCCGCCCGTCTG 21231 |||||||| | || ||| | ||| || |||||||| ||||| || || | Sbjct 713 TTGGTAGTACATGGCCGAGTCGTTAAGGC----CT--TTTGCAGCTACGCCACCAGTTTT 766 Query 21232 GATGAAGTTGCGCCACTCGTCGCCACCGACGCGGCCGCCCGTCGCCGACAGCACCTTCTG 21291 |||||||||| |||| || || ||||| || ||||||||||||| | ||| ||| Sbjct 767 GATGAAGTTGAGCCATTCTTCCGGGCCGACCCGCCCGCCCGTCGCCGTGATGACCCGCTG 826 Query 21292 CACCATGTTCGCTTCGTTCCTGAACGTCGCTTCGTCCTTCGTGCC-GCCGCGCAGCTCGA 21350 |||||||| ||| | | |||| ||| ||| | | ||| ||||||||| |||| Sbjct 827 CACCATGTCCGCCTGATCGGTGAAGGTCTTTTCA-CTGGCAAGCCCGCCGCGCAGTTCGA 885 Query 21351 TGACCTTCAGCATGTTCATGAACTTCTCTTCGTTCGCGTGCGCGTCTTCCGCGCCGAACA 21410 |||| |||||||| | |||||| |||||| | | | || || |||| |||| Sbjct 886 TGACGCGCAGCATGTCGAGAAACTTCCGTTCGTTGTCTTTCCCGCTCTCTTCGCCAAACA 945 Query 21411 TCGCCTCGTTCGCGAACTTCATTTTCGCGAGCGTCGGCATCACCATCTGCGCGTGGTGCT 21470 | || ||| || || ||||| || ||||| || ||||||||||||| ||||| ||| Sbjct 946 TTGCAGTGTTGGCAAATTTCATCTTGGCGAGGGTGGGCATCACCATCTCGGCGTGATGCA 1005 Query 21471 CGTCCGCGAAG 21481 |||| || ||| Sbjct 1006 CGTCGGCAAAG 1016 >seq17740 Length=755 Score = 178 bits (196), Expect = 3e-40 Identities = 395/575 (69%), Gaps = 17/575 (3%) Strand=Plus/Plus Query 4566 CTTCACGTTCGACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGA 4625 ||||| |||| ||| ||| ||| |||| ||| | || | || || |||||||| Sbjct 1 CTTCAGCTTCGGCGACCCGGAGCCTGTCAG---CCGTATCCAGCTGCTGGACTACGTCGA 57 Query 4626 GTGCTGGTCGAACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATC 4685 || || ||||| ||||| ||||||||| | | | || |||||| | Sbjct 58 AAGCATGTTCAACGGTCGATGGTATGAGCCGCCGCTGCCGTGGGATGGATTGGCGAGCGC 117 Query 4686 GTTTCGCGCGAGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTC 4745 ||| |||||| |||||||| |||| ||| | ||| | ||| ||| |||| | | Sbjct 118 GTTCCGCGCGTCGCCGCACCATGGCTCTGCGATCTTCCTGAAGCGCAACCTGCTCAAGGC 177 Query 4746 GACGTTCCGCCCGCA-CCGCTGGCTGTCGCGGCACG-CGTTCGAGCGGTGGGCGCTCGAT 4803 || |||| ||| || |||| |||||||| | | || |||| | | |||||| || Sbjct 178 GATGTTCGTCCCCCATCCGC-GGCTGTCGAG-CGCGACGTTTGGGGCCATGGCGCTGGAC 235 Query 4804 TTCCTGACGTTCGGCAACGGCTATCTGGAAC-GCCGC-CGCAA-CATGGTCGGCGGCACG 4860 ||||| |||||||| | ||| | || | ||||| |||| || || |||| | || Sbjct 236 TTCCTCGTTTTCGGCAATGCCTACGTCGAGCAGCCGCGCGCATTCACGG--GGCGCC-CG 292 Query 4861 CTGCGGCTCGAGCCCGCGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTCAGCGGCTTC 4920 ||| ||| ||| |||||| || |||||| || ||| | || || | | Sbjct 293 CTGGAGCTGCAGCACGCGCTGGCCAAGTACACGCGCCGCGGGCAGGAGCCGGGCCGGTAT 352 Query 4921 GTGTACGTGAACGGCTGGCAGGAGCGGCACGAGTT-CGAGCCCGACAGCGTGTTCCAGCT 4979 | | |||| |||||||| | || ||||||||| | |||| | || ||||||| || Sbjct 353 TTCTTCGTGCGCGGCTGGCTGCAGGAGCACGAGTTTCCAGCCGGCTCGC-TGTTCCACCT 411 Query 4980 -CGTGCGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGC 5038 || | || | || ||||||| ||| |||| || |||||||||| | ||| |||||| Sbjct 412 TCGCGAGGATG-ACGTCAATCAAGAGATCTACGGTTTGCCCGAGTACATCAGCGCGCTGC 470 Query 5039 ACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCA 5098 | ||||||||||| ||||| | | || |||||||||| ||||| |||| ||||| Sbjct 471 AGTCGGCCTGGCTCAACGAGGCAGCCACCATGTTCCGGCGGAAGTACTACGCCAACGGGT 530 Query 5099 GCCACGCCGGCTTCATCCTGTACATGACCGACGCC 5133 ||||||||||||||||| ||| || | |||||| Sbjct 531 CGCACGCCGGCTTCATCCTCTACCTGTCGGACGCC 565 >seq15326 Length=957 Score = 152 bits (168), Expect = 1e-32 Identities = 232/328 (71%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 2137 GCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCA 2196 || ||||| |||||| ||| ||||||||||| || |||| |||||| | || || || Sbjct 318 GCCGCGAACTGCAGCATTTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCG 259 Query 2197 ACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATCTCGATCGACGTGAAGAGC 2256 | ||||| |||| | || |||||||||| | || | |||| ||| || ||| | Sbjct 258 ATCAGATAGGCCTTGTCGGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATC 199 Query 2257 TTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGC 2316 |||||||||||||| | ||||| || |||||||| ||| |||||||||||| || Sbjct 198 TTCTGGCGCTTCTTGTTGATCGCGATCAGTTCGTCGGTGGGAGAGATCTGCGCATAGAGG 139 Query 2317 GCCATCTTCCCTTTCAGCGGGCCGTCTTCGATCTCGGCTGCCTTCAGCGCGATCACGTCG 2376 || | ||| ||| || |||| |||| ||| | | ||| | ||| | ||||||| Sbjct 138 GCGAGCTT--CTTGGCGC-CGCCGATCTCGACCTCTTCGGTCTTGACCGCCAGCACGTCG 82 Query 2377 CCATACGCGCCGAACGGGTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCTCGACG 2436 |||||||||||||| ||||| | ||| |||| ||||||||| | | Sbjct 81 CCATACGCGCCGAA-------TTCGCTG--CTCGGGCTGTAGCCGCGGATGTGCTCCATG 31 Query 2437 TTCACGCGTGCGCCGTACAGCTTCGGGT 2464 |||||||| || ||||| | |||||| Sbjct 30 TTCACGCGGGCTCCGTAGACGGTCGGGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114217089062418