Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq9234 419 5e-113 seq17740 174 4e-39 seq15326 156 1e-33 >seq9234 Length=2011 Score = 419 bits (464), Expect = 5e-113 Identities = 1064/1606 (66%), Gaps = 40/1606 (2%) Strand=Plus/Minus Query 2909 CGAAAAGTGGAAGGACGCAACGCCCGTCGAGCGCATCGAGGCATCGCTCGAAGTACGCCT 2968 ||| || ||| | ||||| ||| |||| ||| || | | |||| || || | || Sbjct 1738 CGACAAATGGGATGACGCGCAGCCGCTCGATCGCGTCAATGGCGCGCTTGAGGTGAGGCT 1679 Query 2969 GATGGTGTTGATCGCGAAGGAGAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCT 3028 ||| | ||||| |||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 1678 GATCCAGCTGATCCTGAAGACGGAGAAGACCGGCGGCGACTACAAGGAGATTGACCTTCT 1619 Query 3029 CGGCCGCCAAGTCGAGCGGCTCGCGCGCGTGCGCAAGTACGACGAGACGGGGAAGGAATC 3088 || || || | ||||| |||||||| |||||| | |||| ||| ||| Sbjct 1618 GGGGCGGCAGCTGGAGCGCACGGCGCGCGTCGAGAAGTACCAGCAGACCGGGCGCGAAGG 1559 Query 3089 GGACCTGAACCCGAAGATTGCGTCGCGCAACGCCGGCCCGAAACGCCGTGCGCCGCGCAA 3148 |||| |||| ||||| || ||| ||||||| |||| ||||| ||| | |||||| Sbjct 1558 GGACTTGAATCCGAACATCGCGGCGCGCAATGCCGCGCCGAAGCGCAAGCCCAAGCGCAA 1499 Query 3149 CGAAATCAGCGACGAGCAGCACAAGCGCATCATCGAAGC---GTTCCGCGATTCGCTGTT 3205 |||| |||||| ||| ||| | |||| | | ||| | | | ||||| ||| || Sbjct 1498 CGAACTCAGCGCCGACCAGATC--GCGCTGC-TGGAAACCAAGCTGCGCGAGTCGAACTT 1442 Query 3206 CGACT---ATCAGAAAGTCTGGTATCGGAACGGCGAT--CAGCGCACGCGCAACATCCTG 3260 | | ||||||| ||||| ||| | | || | |||||| |||| ||||||| Sbjct 1441 CCCTTTCCATCAGAA---CTGGT-TCG-ATCAGCAGTACCAGCGCCTGCGCGCCATCCTG 1387 Query 3261 AAATCGCGGCAGATCGGTGCGACGTGGTACTTCGCGCGCGAGGCGCTCGTCGACGCCCTC 3320 ||| ||||||||||||||||||| | ||||| ||||||||||||| || || || | Sbjct 1386 AAAGCGCGGCAGATCGGTGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCT-CGGCCGC 1328 Query 3321 GACACCGAC-CGTAATCAAATCTTCCTGTCGGCGAGCAAGGCTCAGGCGCACGTCTTCAA 3379 || | | || || | | ||| |||||||| ||||| ||||| ||| ||| Sbjct 1327 GAAAGAGGGGCGCAACAAGCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCAGTTCC- 1269 Query 3380 GCAG-TACATCACGCAGTTCGCGCGCGCGGCGGCCGACATCGAGCTCACGGGCGATCCGA 3438 |||| |||||| | |||||| | || |||| |||| || | |||||| | Sbjct 1268 GCAGCTACATCGTCGACTTCGCGAAAGAGGT---CGACGTCGACCTGAAGGGCGAGAACA 1212 Query 3439 TCATCTTGCCGAGCGGCGCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGT 3498 ||| || || |||||| |||| |||||| || || ||||| || || ||| Sbjct 1211 TCAAGCTGTGGAACGGCGCCGAGCTGATCTTCCTTGGCACCAACGCCATGACGGCCCAGA 1152 Query 3499 CGTACCACGGCAACTTCTACTTCGACGAATACTTTTGGGTTCCGAAGTTCCGCGAGCTGA 3558 || |||||| ||||||||||||| |||| |||||||| || ||| | || | | Sbjct 1151 GCTATCACGGCGACTTCTACTTCGATGAATTTTTTTGGGTCCCACGCTTCAGGCAGATCA 1092 Query 3559 ACAAGGTCGCCTCCGGCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGC 3618 ||||| | ||| | ||||| |||||||| |||||||||||| || ||| |||| Sbjct 1091 ACAAGCTGGCCAGTGCGATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGACGC 1032 Query 3619 CGTCCAGCG-TCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGC 3677 | || ||| | |||||||||| | || |||||||| ||||| || |||| ||| Sbjct 1031 CCTCG-GCGATGTCGCACGAGGCCTTCGGGTTCTGGACCGGCGACGACCGGAACAAGGGC 973 Query 3678 CGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCG-CGGCAT 3736 ||||| || | | ||| |||||||| |||||| || ||| | ||| |||||| Sbjct 972 CGCGCGAAAAAGGACCACGTCCGCATCGACACCAGCCACAAGATGCT-GCGCGGCGGCAT 914 Query 3737 GTTGTGCGAGGACGCGCAG-TGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCG 3795 | || || || |||| ||||| | ||||| || ||| || || | ||| | Sbjct 913 GCTGGGCCTCGAT-CGCAAATGGCGCGACATCGTCACGGTGGAAGACGCCGTCGCGATGG 855 Query 3796 GCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGA 3855 ||| ||| |||||||| |||| |||||||||| || |||||| ||| || ||||||| Sbjct 854 GCTTCGATCTGTTCGATATCGCCGAGCTGCGCGAGGAATACAGCCTCGACGAGTTCGCGA 795 Query 3856 ATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGC 3915 | ||| |||||||||||||||||||||| ||||| |||||| |||| || | ||| Sbjct 794 ACCTGTTCATGTGCCAGTTCATCGACGACAGCTTGTCGCTGTTCACGCTGGCGCAGATGC 735 Query 3916 AACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTCGCNNNNNNNNNNNN 3975 | |||||| ||||| ||||| ||| | | |||| || || Sbjct 734 AGGCTTGCATGATCGACAGCTGGGA--GATGTG-GAGCGACGTCAAGCCGCTTTGGATTC 678 Query 3976 NNNCGTTCG---GCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCGACT 4032 | | || || || |||||||||||||||||| || | || |||||| Sbjct 677 GGCCCTACGCTCACTTTC---CGGTGTGGGTCGGCTACGACCCATCAGACAAGGGCGATG 621 Query 4033 CGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGCTCG 4092 | || | || | |||||| | || Sbjct 620 CCGCTGCACTGGTGGTGGTCGCGCCGCCGCGCGTGCCAGGCGGCAAGTTCCGCATCCTAC 561 Query 4093 AACGTCATCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCGATCA 4152 | || | |||||| ||| ||||| |||| ||||||| ||| ||| ||||| Sbjct 560 ATCGCGAGCAGTTCAAGGGCTCGGACTTCGAGGCGCAGGCCGAGGCCATCCGTCGGATCA 501 Query 4153 CGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCT 4212 | |||| |||||||||| | |||| ||||||| || ||| |||| ||||| | Sbjct 500 CCCAGCAATACAACGTCGTGCATATCGGCATCGACAAGACCGGCCTGGGTGCTGGCGTGT 441 Query 4213 ACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCT-GAACTACTCGCCCGAGGTG 4271 |||| |||| |||||||| || | | | | ||| | ||| ||||||| Sbjct 440 TCCAGATCGTCGAGAAGTTCTTTCC-CCAGGTGAAGGGCTACCAGTACAGCATCGAGGTG 382 Query 4272 AAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGAC 4331 || ||||| ||||| |||| || ||| ||| || || || ||| | ||||| Sbjct 381 AAGCAGCGCCTGGTGCTGAAGGCGCAACAGGTCATCCACAAGGGGCGACTGGAGTTCGAT 322 Query 4332 GCGGGCTGGACCGATCTGGCGGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGC 4391 || || |||||||| | || ||||| |||||||| ||||| | | | || || ||| Sbjct 321 GCTGGATGGACCGACATCGCCGCGGCCTTCATGGCCATCAAGCGCGTGCTCACCGCCAGC 262 Query 4392 GGCCGTCAGGCGACCTACACCGCTGGCCGTACCGACGAGACGGGCCACGCCGACCTGGCG 4451 ||||| | ||||||| | | ||||| |||| | ||||| ||||| || || ||| Sbjct 261 GGCCGAAACATGACCTACGACTCGGGCCGCTCCGAAGTCACGGGACACGCGGATCTTGCG 202 Query 4452 TGGGCGTGCCTGCACGCGATCGACCGCGAGCCGCTCGCCGGCGGCG 4497 ||||| |||||||| ||||| ||| | |||||||||| || Sbjct 201 TGGGCAACGATGCACGCGCTCGACAACGAATCACTCGCCGGCGACG 156 >seq17740 Length=755 Score = 174 bits (192), Expect = 4e-39 Identities = 392/574 (68%), Gaps = 15/574 (3%) Strand=Plus/Plus Query 4621 CTTCACGTTCGACGATCCGACGCCCGTCATGAACCGGGCCGAGATTCTCGATTACGTCGA 4680 ||||| |||| ||| ||| ||| |||| ||| | || | || || |||||||| Sbjct 1 CTTCAGCTTCGGCGACCCGGAGCCTGTCAG---CCGTATCCAGCTGCTGGACTACGTCGA 57 Query 4681 GTGCTGGTCGAACGGCGAATGGTTCGAGCCGCCGGTCAGCTTCGCCGGCCTGGCGAAATC 4740 || || ||||| ||||| ||||||||| | | | || |||||| | Sbjct 58 AAGCATGTTCAACGGTCGATGGTATGAGCCGCCGCTGCCGTGGGATGGATTGGCGAGCGC 117 Query 4741 GTTTCGCGCGAGCACGCACCATAGCTCGGCGCTGTTCTTCAAGGCGAACGTGCTGGCGTC 4800 ||| |||||| |||||||| |||| ||| | ||| | ||| ||| |||| | | Sbjct 118 GTTCCGCGCGTCGCCGCACCATGGCTCTGCGATCTTCCTGAAGCGCAACCTGCTCAAGGC 177 Query 4801 GACATTCCGCCCGCA-CCGCTGGCTGTCGCGGCACG-CGTTCGAGCGGTGGGCGCTCGAT 4858 || ||| ||| || |||| |||||||| | | || |||| | | |||||| || Sbjct 178 GATGTTCGTCCCCCATCCGC-GGCTGTCGAG-CGCGACGTTTGGGGCCATGGCGCTGGAC 235 Query 4859 TTCCTGACGTTCGGCAACGGCTATCTGGAAC-GCCGC-CGCAA-CATGGTCGGCGGCACG 4915 ||||| |||||||| | ||| | || | ||||| |||| || || |||| | || Sbjct 236 TTCCTCGTTTTCGGCAATGCCTACGTCGAGCAGCCGCGCGCATTCACGG--GGCGCC-CG 292 Query 4916 CTGCGGCTCGAGCCCGCGCTCGCGAAGTACGTACGGCGCAAGGCGGATTTCAGCGGCTTC 4975 ||| ||| ||| |||||| || |||||| || ||| | ||| || | | Sbjct 293 CTGGAGCTGCAGCACGCGCTGGCCAAGTACACGCGCCGCGGGCAGGAGCCGGGCCGGTAT 352 Query 4976 GTGTACGTGAACGGCTGGCAGGAGCGGCACGAGTTCGCGCCCGACAGCGTGTTCCAGCT- 5034 | | |||| |||||||| | || ||||||||| | ||| | ||||||| || Sbjct 353 TTCTTCGTGCGCGGCTGGCTGCAGGAGCACGAGTTTCCAGCCGGCTCGCTGTTCCACCTT 412 Query 5035 CGTGCGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCTGAGCTCGCTGCA 5094 || | || | || ||||||| ||| |||| || |||||||||| | ||| ||||||| Sbjct 413 CGCGAGGATG-ACGTCAATCAAGAGATCTACGGTTTGCCCGAGTACATCAGCGCGCTGCA 471 Query 5095 CTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACGGCAG 5154 ||||||||||| ||||| | | || |||||||||| ||||| |||| ||||| Sbjct 472 GTCGGCCTGGCTCAACGAGGCAGCCACCATGTTCCGGCGGAAGTACTACGCCAACGGGTC 531 Query 5155 CCACGCCGGCTTCATCCTGTACATGACCGACGCC 5188 ||||||||||||||||| ||| || | |||||| Sbjct 532 GCACGCCGGCTTCATCCTCTACCTGTCGGACGCC 565 >seq15326 Length=957 Score = 156 bits (172), Expect = 1e-33 Identities = 233/328 (71%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 2192 GCGGCGAATTGCAGCGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCCGCGAGCCCG 2251 || ||||| |||||| ||| ||||||||||| || |||| |||||| | || || ||| Sbjct 318 GCCGCGAACTGCAGCATTTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCG 259 Query 2252 ACGAGATACGCCTCGCCGATGTCGGCGAAGTCGGGGTTGATTTCGATCGACGTGAAGAGC 2311 | ||||| |||| | || |||||||||| | || | ||||| ||| || ||| | Sbjct 258 ATCAGATAGGCCTTGTCGGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATC 199 Query 2312 TTCTGGCGCTTCTTCGACAGCGCGACGAGCTCGTCGGTCGGATCGATCTGCGCATACAGC 2371 |||||||||||||| | ||||| || |||||||| ||| |||||||||||| || Sbjct 198 TTCTGGCGCTTCTTGTTGATCGCGATCAGTTCGTCGGTGGGAGAGATCTGCGCATAGAGG 139 Query 2372 GCCATCTTCCCTTTCAGCGGGCCGTCTTCGATTTCGGCCGCCTTCAGCGCGATCACGTCG 2431 || | ||| ||| || |||| |||| || | | ||| | ||| | ||||||| Sbjct 138 GCGAGCTT--CTTGGCGC-CGCCGATCTCGACCTCTTCGGTCTTGACCGCCAGCACGTCG 82 Query 2432 CCATACGCGCCGAACGGGTTGTTCGCCGACAGCGGCGCCCAGCCCTTGATGTGCTCGACG 2491 |||||||||||||| ||||| | ||| |||| ||||||||| | | Sbjct 81 CCATACGCGCCGAA-------TTCGCTG--CTCGGGCTGTAGCCGCGGATGTGCTCCATG 31 Query 2492 TTCACGCGTGCGCCGTACAGCTTCGGGT 2519 |||||||| || ||||| | |||||| Sbjct 30 TTCACGCGGGCTCCGTAGACGGTCGGGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117253024908712