Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq19355 145 2e-30 seq16724 80.6 6e-11 >seq19355 Length=665 Score = 145 bits (160), Expect = 2e-30 Identities = 247/358 (69%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 25955 CGACGCGCTCGTAGACGCGGACATACGACTTGCTGCCGATCACCTGGAGCGCCTCGCCGA 26014 || |||||||||||| || ||||| | ||||||||| | |||| | ||| |||| || Sbjct 600 CGTCGCGCTCGTAGAACCGCACATAGGTCTTGCTGCCCACCACCGTCACCGCGTCGCTGA 541 Query 26015 TCGCTCGCATCGCTTCCAGCCAGCGCGGATCGGTGATGTCCAGTCGGCGCAGCGCGAGCA 26074 | || |||||| | | ||||||||||||| || | || || |||||| ||||| Sbjct 540 TGGCCTTCATCGCCTGCTGCCAGCGCGGATCATCGAACTTGAGGCGATGCAGCGAGAGCA 481 Query 26075 CGCGCCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAACGCCTGCGTCACGATCGCCT 26134 | ||||| ||||| ||| |||| | | | || || | || | | Sbjct 480 CCTCGCCGGTCTTGATGCTGCCGTCCTGGCCCACCTTGAAGGCGCTATTGACCAAGGTGC 421 Query 26135 GAATCTCAGGGCGGGCGTCCGTGGTCCAGTCACGCAGACACTCGTCGATCATGGATTTGG 26194 | | || | |||| | | ||||||||| ||| ||||| ||||| | || |||| Sbjct 420 GCAGTTCGGCTCGGGAGCCTTCGGTCCAGTCGTTCAGGCACTCATCGATGAGGGCCTTGG 361 Query 26195 CGGCCTGCAGGCGCTCGTCGAACGCAATGCGGTCCTGGATGGCCCGCTGGATTCGATAGC 26254 | |||||||||||||||||||| || | ||||||| ||| ||| |||| |||| Sbjct 360 CCGCCTGCAGGCGCTCGTCGAATTGGATACTGTCCTGGCAGGCGCGCAGGATCTTGTAGC 301 Query 26255 GACCGTCGAACGAGTACAGTGTGACGTTGCCCTTCTTACCGCCGACCTTCGAGCCGTA 26312 | |||||| | | |||||| | ||||||||||| | ||||||| || | |||||| Sbjct 300 GGCCGTCGTAGGTGTACAGGCTCACGTTGCCCTTGTCGCCGCCGATTTTGGCGCCGTA 243 >seq16724 Length=827 Score = 80.6 bits (88), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 29393 GGTAATGCGCATCCACGCCTCGCTACGCGTGGCACCGTGGCGGCTATGCGTTTCGGTTGC 29452 ||| ||||||| ||| | |||| || ||| ||| |||||| || || || || Sbjct 328 GGTGATGCGCAACCAGCCATCGCGGCGGGTGTAGCCGGTGCGGCTGTGGGTGCGTGTGGC 269 Query 29453 GTTGAAGTGCATGCGCCAGC-GCTTCGCGAGCGCGTTCAGTTCGTCGAGGCTGGTTACCG 29511 ||| || || |||||| | ||| || || | ||| | ||| | |||||||| |||| Sbjct 268 GTTATAG-GCCTGCGCCCACTGCTGGGCCAGAGTGTTGATTTCCTTCAGGCTGGTAACCG 210 Query 29512 GTT---GGAACTTGAGGCCCGGTTCGAACTTGCGTT-CGATGAGGTTCCGCGCGTTTTCC 29567 | ||| ||| || | |||||| | ||||| |||| | || ||| || || Sbjct 209 GCGCACGGAGCTTCAGCAGGGCTTCGAAGT-GCGTTTCGATCAAGTAGTTCGCATTCTCG 151 Query 29568 ACCTGTCCCGTGGCGCGTGCATTGCCGACCTTGTGCACGATCAGCTCGATACC 29620 ||||| ||| | ||||||||||||||||| | || | |||| ||||||| || Sbjct 150 ACCTGACCCTTTGCGCGTGCATTGCCGACTTCGTTGATGATCGGCTCGATGCC 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119671536499648