Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq9234 351 2e-92 seq17740 331 2e-86 seq9729 327 3e-85 seq15326 185 2e-42 >seq9234 Length=2011 Score = 351 bits (388), Expect = 2e-92 Identities = 913/1385 (66%), Gaps = 33/1385 (2%) Strand=Plus/Plus Query 4168 ATGGACATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTG 4227 |||| |||||| | |||||||| ||| ||||| || || ||||||||||| | |||||| Sbjct 284 ATGGCCATGAAGGCCGCGGCGATGTCGGTCCATCCAGCATCGAACTCCAGTCGCCCCTTG 343 Query 4228 CTGATCACGTCGTGCGCCTTGAGCACCAGGGCGGTT-TTCACGTCCACGGAATAGGTGAA 4286 ||| || | |||||||| ||||||||| || | ||||| || | | || | | Sbjct 344 TGGATGACCTGTTGCGCCTTCAGCACCAGG-CGCTGCTTCACCTCGATGCTGTACTGGTA 402 Query 4287 GCCTTCGGCATCCGGACGGAACTTCTGCACCAGGCGGAACACCGCATCGCCGATGCCGGT 4346 ||| | | | ||| |||||||| || | ||||||| || | || | |||||| Sbjct 403 GCCCTTCACCTGGGGAAAGAACTTCTCGACGATCTGGAACACGCCAGCACCCAGGCCGGT 462 Query 4347 CCGGTCGATGCCCACGTAGGCGACGTCGTAGCGCTCAGCGACGCGCCGGATGGCGCCGGC 4406 | ||||||||| | | |||||| ||| ||| | || || |||||||| |||| Sbjct 463 CTTGTCGATGCCGATATGCACGACGTTGTATTGCTGGGTGATCCGACGGATGGCCTCGGC 522 Query 4407 CTGTTCCTCGTAGTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAACTTGCCGCC 4466 ||| ||||| |||| ||| |||||| | || | || | ||||||||||||||| Sbjct 523 CTGCGCCTCGAAGTCCGAGCCCTTGAACTGCTCGCGATGTAGGATGCGGAACTTGCCGCC 582 Query 4467 CGGTACCAGTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGG 4526 || || | |||| || Sbjct 583 TGGCACGCGCGGCGGCGCGACCACCACCAGTGCAGCGGCATCGCCCTTGTCTGAT---GG 639 Query 4527 GTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAGTC 4586 ||||||||||||||||||||| || || | ||||| | | |||| || ||| Sbjct 640 GTCGTAGCCGACCCACACCGGAAAGTGAGCGTAGGGCCGAATCCAAAGCGGCTTGACGTC 699 Query 4587 TTCCCATACCTCCCAACTGTCCACCATCCCGCGCATG-AGCATCGCGAGCGGAAACACCG 4645 ||| | |||||| ||||| | ||| | || || | | ||| |||| |||| || Sbjct 700 GCTCCACATCTCCCAGCTGTCGATCATGCAA-GCCTGCATCTGCGCCAGCGTGAACAGCG 758 Query 4646 ACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCTGTACT 4705 || | ||||||||||||| |||||||| |||||| ||||| ||| |||||| | Sbjct 759 ACAAGCTGTCGTCGATGAACTGGCACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATT 818 Query 4706 CCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGC-CGCGGAGCGCATCCTCCACC 4764 || |||||||| | ||| |||||||| | | |||| |||| | || || |||||| Sbjct 819 CCTCGCGCAGCTCGGCGATATCGAACAGATCGAAGCCCATCGCGACG-GCGTCTTCCACC 877 Query 4765 GTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGG 4824 || ||||| | |||||| | || || || |||||||| |||| ||| |||| Sbjct 878 GTGACGATGTCGCGCCATTTGCGATCGAGGCCCAGCATGCCGCCGCGCAGCATCTTGTGG 937 Query 4825 CTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCG---CCG 4881 || ||||| || || |||||| | || || ||| | | || ||| Sbjct 938 CTGGTGTCGATGCGGACGTG---GTCCTTTTTCGCGCGGCCCTTGTTCCGGTCGTCGCCG 994 Query 4882 GACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGC 4941 | ||||||| ||||||| ||||||| || ||||| ||||| ||||||| ||| Sbjct 995 GTCCAGAACCCGAAGGCCTCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGC 1054 Query 4942 CAGTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACC 5001 ||||||||||| ||||| | ||| | |||| | | | |||||| || ||| Sbjct 1055 CAGTGCTTGTGCGAAGCCATCGCACTGGCCAGCTTGTTGATCTGCCTGAAGCGTGGGACC 1114 Query 5002 CAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGTG 5061 || || ||||||||||||| | || ||||||||| ||| || || |||||| ||| Sbjct 1115 CAAAAAAATTCATCGAAGTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTG 1174 Query 5062 CCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCTCGATC 5121 || || ||| ||| ||||||||| |||| || ||||||||||| |||| Sbjct 1175 CCAAGGAAGATCAGCTCGGCGCCGTTCCACAGCTTGATGTTCTCGCCCTTCAGGTCGA-- 1232 Query 5122 CCGGCCGCGTCCTTGGCGAACTGGATGATGTA-TTGCTTGAAGACGTGCGCCTGCGCCTT 5180 || | | || || ||||| | || |||||| ||| ||| ||| ||||||||||| Sbjct 1233 -CGTCGACCTCTTTCGCGAAGTCGACGATGTAGCTGC-GGAACTGGTGGGCCTGCGCCTT 1290 Query 5181 GCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATGAACGCCTCGCG 5240 ||||| | ||||| || |||||| || || || || | ||||||||| Sbjct 1291 CGACGCCGACAAGAAAAGCTTGTTGCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCG 1350 Query 5241 TGCGAAGTACCACGTCGCGCCGATCTGCCG-GCTCTTGAGCAGGTTGCGGATGCGCTCGA 5299 | ||||| | ||||| ||||||||||| ||| || || | | ||| | ||||| | Sbjct 1351 CGAAAAGTAATAGGTCGCACCGATCTGCCGCGCT-TTCAGGATGGCGCGCAGGCGCTGGT 1409 Query 5300 CCTGCCCAGCCTCGTACCAGACGCGCTGGTAATCGAACATCGAGTCGCGGA---AGGCCT 5356 |||| | ||| ||||| | ||| || ||| |||| ||||| | || | Sbjct 1410 ACTGCTGA---TCGAACCAGTTCTGATGGAAAGGGAAGTTCGACTCGCGCAGCTTGGTTT 1466 Query 5357 CCAGGAGCTGCG-TCTGTTCCTCGGGACTGATCGCATTGCGCTCGGGCTTGCTGCGCGGC 5415 |||| ||| ||| |||| |||| |||| | ||||||| |||||||| |||| Sbjct 1467 CCAGCAGC-GCGATCTG---GTCGGCGCTGAGTTCGTTGCGCTTGGGCTTGCGCTTCGGC 1522 Query 5416 CCCTTGTTGCGGTTCGCCACCTTCGGGTTCAGGTCGGTTTCGTTGCCGCTGGCCTCGTAC 5475 | ||||| ||| | ||||| |||| ||| |||| ||| | || |||| Sbjct 1523 GCGGCATTGCGCGCCGCGATGTTCGGATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTAC 1582 Query 5476 CGGCGCACGCGCGCCATGCGCTCCATTTGTCGGCCAAGCAGGTCGATTTCCTTGTAGTCC 5535 ||||||||| ||||||||| || || || || ||||| || ||||||||||| Sbjct 1583 TTCTCGACGCGCGCCGTGCGCTCCAGCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCG 1642 Query 5536 CGGCC 5540 | ||| Sbjct 1643 CCGCC 1647 >seq17740 Length=755 Score = 331 bits (366), Expect = 2e-86 Identities = 508/714 (71%), Gaps = 28/714 (4%) Strand=Plus/Minus Query 3155 ACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGTAGCAACTGG 3214 ||||| |||||| | ||| |||||||| || || |||||||| ||||| | || || Sbjct 738 ACGTTTTTGATGGCCGCGAAGTCGTCCTTGGCCGCGACCTCGGAGACCGGAATCAGCTTT 679 Query 3215 ATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAGGTTGCGGAAATTGCCCGGCCCC 3274 | || || |||||| || |||| || ||||||||||||||| |||||||| ||| Sbjct 678 AGGCCCTCGGCCTTGCCGCCCGGGGCGTGCAGGAACAGGTTGCGGAAGTTGCCCGGTCCC 619 Query 3275 TTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACGTCCTCC-TGCTT--CTGCGCCGCA 3331 ||||| | ||||| ||||||||| || | || |||| || |||| ||| || Sbjct 618 TTGGCCCCCTTCAGCGCCTCGCGTAGTGCATCCGCGTCGGCCGTGCTGACCTGGGCG--- 562 Query 3332 TCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGTTCTTGTAGTACCGGCGCCGGAAC 3391 || | || ||| |||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 561 TCCGACAGGTAGAGGATGAAGCCGGCGTGCGACCCGTTGGCGTAGTACTTCCGCCGGAAC 502 Query 3392 AGCGTGGCCGATTCGTTCAACCACGTGGCGTTCAGCGCGGACAGGTATTCCGGCAGGCCG 3451 | ||||| | ||||| | ||| | | | ||||||| | ||| || |||| ||| Sbjct 501 ATGGTGGCTGCCTCGTTGAGCCAGGCCGACTGCAGCGCGCTGATGTACTCGGGCAAACCG 442 Query 3452 TACACCTCCTGATTGATGTCCGGTTCCTGGAGGTGGAACACCGAGCCGGCGGCGAAGGTG 3511 || | ||| ||||||| ||| || | |||||||||| ||||||||| | || | Sbjct 441 TAGATCTCTTGATTGACGTCATCCTCGCGAAGGTGGAACAGCGAGCCGGCTGGAAACTCG 382 Query 3512 TACGGCTGCTGCCAGTTCTGCACaaaaaaaTAGGTGTTCAGGTCGAGCCCGCGCCGAACG 3571 | | |||| ||||| |||| || ||||| | | | || ||||||| || | Sbjct 381 TGCTCCTGCAGCCAGCCGCGCACGAAGAAATACCGGCCCGGCTCCTGCCCGCGGCGCGTG 322 Query 3572 TACTTGGCCAGAGGCGTG-------TCGAGCCGGATTGTCCCGCCCAACACGTTTTCGCG 3624 ||||||||||| ||||| || ||| || | |||| || || |||| Sbjct 321 TACTTGGCCAG-CGCGTGCTGCAGCTCCAGCGGG--CGCCCCG-TGAATGCG----CGCG 270 Query 3625 GC-GCTCCAGGTACGCATTGCCGAACACCTGCCAGTCCAGCACCAGGCGCTCGAACGTCG 3683 || |||| | ||| ||||||||||| || | |||||||| ||| | | | ||||||| Sbjct 269 GCTGCTCGACGTAGGCATTGCCGAAAACGAGGAAGTCCAGCGCCATGGCCCCAAACGTCG 210 Query 3684 CGCGCGACAACAGCGGGTGCGGGATGAACGT-GC--TGACCAGGATATTCCGCTTCACGT 3740 ||| ||||| | |||| || |||| |||| | || ||| |||| || ||||||| | Sbjct 209 CGCTCGACAGCCGCGGATGGGGGACGAACATCGCCTTGAGCAGG---TTGCGCTTCAGGA 153 Query 3741 AGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATCCCACGGCA 3800 ||| || |||| ||||||| | |||||||||| || ||||| ||||||||||||| Sbjct 152 AGATCGCAGAGCCATGGTGCGGCGACGCGCGGAACGCGCTCGCCAATCCATCCCACGGCA 93 Query 3801 TGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATCCAGCAACT 3854 ||||| |||||||| | || || ||||| |||||||| ||||||| || Sbjct 92 GCGGCGGCTCATACCATCGACCGTTGAACATGCTTTCGACGTAGTCCAGCAGCT 39 >seq9729 Length=1888 Score = 327 bits (362), Expect = 3e-85 Identities = 555/800 (69%), Gaps = 3/800 (0%) Strand=Plus/Minus Query 21810 ATGAAGGCCTACGGCGTCAGCCAGGTCGAGAAGGCCGAGCTGATGCGCGACGCCATGAGC 21869 |||||| ||| |||| |||| | || || || | |||||| || || | || Sbjct 1078 ATGAAGACCTTCGGCACCAGCATGAATGACAACCTCGGGTTGATGCTGGATGCAACGACT 1019 Query 21870 GTGTTCGCGGACACGCACCACGCCGAGCTGGTGATGCCGACGCTCGCCAAGATGAAGTTC 21929 | || || ||| ||| ||||||||| |||||||||| || |||||||||||||| || Sbjct 1018 GCCTTTGCCGACGTGCATCACGCCGAGATGGTGATGCCCACCCTCGCCAAGATGAAATTT 959 Query 21930 GCCAACGCAGCCGTGTTCGGCCAGGCGGACGGCGCCGAGAACGAGCGCAAGTTCGTGGAC 21989 |||||| | || |||| ||| | | | ||| || ||||| || ||||| | ||| Sbjct 958 GCCAACACTGCAATGTTTGGCGAAGAGAGCGGGAAAGACAACGAACGGAAGTTTCTCGAC 899 Query 21990 ATGCTCAAGGTCATTGAGCTGCGCGGCGGCCTGGCGAGCGAAGGCGAGTTCAAAAAGCAA 22049 ||||| ||||| || ||||||||||| || || || ||| |||| | || Sbjct 898 ATGCTGCGCGTCATCGAACTGCGCGGCGGGCTTGCCAGTGAAAAGACCTTCACCGATCAG 839 Query 22050 GCCGACATGGTGCAGAAGGTCATCACGGCGACCGGCGGGCGCGTGCAGGCTGACGAATGG 22109 || |||||||||||| ||||||||||||||| |||||||| || | || |||||| Sbjct 838 GCGGACATGGTGCAGCGGGTCATCACGGCGACGGGCGGGCGGGTCGGCCCGGAAGAATGG 779 Query 22110 CTCAACGTCATCAAGACCGGCGGTCTCGCCGCCAAGGGTGCCGATGACAAGGCGTTCTAC 22169 |||||| ||||||| || || || | || || || || | ||| ||| | ||| Sbjct 778 CTCAACTTCATCAAAACTGGTGGCGTAGCTGCAAAAGGCCTTAACGACTCGGCCATGTAC 719 Query 22170 TACACGCTGGAACCGCTGGTGCAG-GAGATGGGCGGTAACCGCGTGGGGACGGCCATGAT 22228 ||| || || | || | ||| ||||||||||| ||||| || || || |||| || Sbjct 718 TACCAACTCGAGGCACTCAT-CAGCGAGATGGGCGGGAACCGAGTTGGCACCGCCACCAT 660 Query 22229 GAGCGCCTATCAGAACCTGTACCAGGGCAAGACGACGAAGCGGGCGCTGCACAACCTGGA 22288 | ||| || |||||||| ||||| || ||||| || || || || | ||| | || Sbjct 659 GTCCGCATACCAGAACCTCTACCAAGGAAAGACCACCAAACGAGCAGCCAAGAACATCGA 600 Query 22289 CAACTTCGGCTTGATCGCCGACCGCAGCAAGGTCAAGGAAGACAAGGCCGGGCAGGTGTC 22348 | || ||||||| |||| ||| | | | |||||||| || ||| || | Sbjct 599 GGCGCTGGGGTTGATCGGAGACCCGTCGAAGCTGTCGCATGACAAGGCTGGTCAGTTGGC 540 Query 22349 GTTCATGGACCCGGGCGCGCTGAAGGGGGCGGACCTGTTCCGCCAGAACCAGTTCGCGTG 22408 ||| || |||| |||||||| |||||| || || ||||| |||||||||| || Sbjct 539 GTTTCTGAACCCTGGCGCGCTCAAGGGGAGCGAGCTATTCCGAACCAACCAGTTCGAATG 480 Query 22409 GCTGGAGAAGGTGCTGCTGCCGACGCTGGCCGCCAAGGGCATCACCGACCGCAAACAGGT 22468 | |||| |||| || || || | || ||||||||||| || | || || Sbjct 479 GATGGAACAGGTTCTTCTACCTGCTTTGAAACAAAAGGGCATCACTGAAAAGGAGCAAGT 420 Query 22469 CGAGGACGCCATCGGCAGCATCTTCTCGAACCGCACGGCGGCGGGCCTGTTCGCGCAGAT 22528 | ||| | |||||||||||||| |||||||| ||| || ||||| || ||||| Sbjct 419 CCTCGACACGATCGGCAGCATCTTTAGCAACCGCACTGCGTCGAATCTGTTTGCCCAGAT 360 Query 22529 GTACCTGCAGCGCCAGCAGATCCACAAGAACATGCGCCTGAACGAAGGCGCCGCCGGCAT 22588 ||||||||||||| | ||||||||||||||| | || |||| || || | ||||| Sbjct 359 GTACCTGCAGCGCGACCAGATCCACAAGAACGCGAAGCTAAACGCCGGTGCTGATGGCAT 300 Query 22589 CGATCAGCTTGA-AGCCAGG 22607 | ||||| || ||| ||| Sbjct 299 CACACAGCTCGACAGCAAGG 280 >seq15326 Length=957 Score = 185 bits (204), Expect = 2e-42 Identities = 281/400 (70%), Gaps = 15/400 (4%) Strand=Plus/Plus Query 6025 ACCCCAAGGTCTACACCGCGCGCGTCAACCTTGAGCACATCCGAGGCTACGACCCGACCG 6084 |||| | |||||| || ||||| ||| | ||||||||||| |||||| ||||| | Sbjct 3 ACCCGACCGTCTACGGAGCCCGCGTGAACATGGAGCACATCCGCGGCTACAGCCCGAGCA 62 Query 6085 GCCCGTTCAAAGCCTACGGCGACGTGACAGCACTGAAGACCGAAGAGCAGGA-------- 6136 || ||| || || ||||||||| || | |||||||||||| || Sbjct 63 GCGAATTCGGCGCGTATGGCGACGTGCTGGCGGTCAAGACCGAAGAGGTCGAGATCGGCG 122 Query 6137 -CGGCAAGATGCGCCTGCTC---GCGCAGATCGATCCCACGGACGACCTGGTCGCCATGA 6192 || ||||| || | ||| ||||||||| |||||| ||||| ||| |||| || | Sbjct 123 GCGCCAAGAAGCTCGCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCA 182 Query 6193 CCAAGGCTCGCCAGAAAATCTTTGCCTCTATGGAGTTGAACCCGAGCTTCGCCGACACCG 6252 |||| |||||||| |||| ||| | || || |||| ||||||||||||| Sbjct 183 ACAAGAAGCGCCAGAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCG 242 Query 6253 GCGAGGCCTACCTGGTCGGCCTCGCCGTGACCGACAACCCGGCAAGCCTGGGATGCGAAG 6312 | ||||||| ||| ||||||| ||||| ||||||||||| || ||||| || ||| Sbjct 243 ACAAGGCCTATCTGATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGAAA 302 Query 6313 TCCTGCAGTTCAGTGC---CAAGGCCAAGACCAACCCGCTCGCCGCACGCAAGCAGAACC 6369 | ||||||||| || ||| | || |||||||| ||||||| |||||| | | | Sbjct 303 TGCTGCAGTTCGCGGCCAGCAATCCGAAAGCCAACCCGTTCGCCGCGCGCAAGGAACAGC 362 Query 6370 CGGACAACCTGTTCACCGAGGCCGTGGAGGTGTCGTTCGA 6409 | ||| | || |||| || ||| | |||| | ||| |||| Sbjct 363 CCGACGATCTCTTCAGCGTGGCGGAGGAGTTCTCGCTCGA 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123875139979132