Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11176 96.9 3e-15 seq4840 86.0 6e-12 >seq11176 Length=1573 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| || || ||| || || || |||||| || || || || | | Sbjct 690 GATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCA 631 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || || || || ||||| ||||| ||| | |||| ||| | Sbjct 630 AAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCT-TGAATCTTTGCTTTGAC 572 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | |||||| |||| || | |||||||| |||| ||| || Sbjct 571 ATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTT 512 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 511 TACAAAAATCTGCAT 497 >seq4840 Length=3826 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 138490 CGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACG 138549 ||||| || || |||||||| ||||||||||| ||||| ||||| | || | Sbjct 2429 CGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCTTTTACATTCTCAATT 2488 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 || || | || || ||||| | ||| | |||||||||||| | |||||| |||||||| Sbjct 2489 GTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAAGTTTTGACAAAAATT 2548 Query 138610 TGCATGG 138616 ||||||| Sbjct 2549 TGCATGG 2555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496113750801360