Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_011551.1 Length=39867 Score E Sequences producing significant alignments: (Bits) Value seq5 168 2e-37 >seq5 Length=40538 Score = 168 bits (186), Expect = 2e-37 Identities = 212/291 (73%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 27365 TTTTCATCGCTTCCAGTAATAAATCCTGTATTGCCCGTTTTGAATTGCGTCGTTCCATGA 27424 ||||||| ||||| || | | ||||| | | |||| ||||| | ||| ||| |||| | Sbjct 20078 TTTTCATTGCTTCAAGCAGAATGTCCTGAACTTCCCGCTTTGACTCGCGGCGTGCCATAA 20019 Query 27425 CCACTTCATCGAGGGTATCTTTAGCAACGATATGGTGAATAAAGACAGGGCGGTTATGTC 27484 | | |||||||| ||| | |||||| || || |||||||| || || |||||||||| Sbjct 20018 CAAGTTCATCGACAGTACCCGCAGCAACAATGTGATGAATAAACACCGGTCGGTTATGTC 19959 Query 27485 CGGCTTGTGCCTGACGAGTCGGGCCGATACGTTCGATAATTTGCTGGTACTGCTCTAAGT 27544 ||||||| || || ||||||||||||||||| || | ||||||||| |||| || | | Sbjct 19958 CGGCTTGAGCTTGTCGAGTCGGGCCGATACGCTCAACAATTTGCTGATACTCTTCAAGAT 19899 Query 27545 CCCACCAGTGGGAGAAAAAGACCAGAATATTACCGCCGTCCTGTAAATTTAAGCCGTGTC 27604 ||||||||| ||| | | || ||||| ||||||||||| | || | ||||| | Sbjct 19898 TCCACCAGTGACCGAATACTGCAAGGATATTGCCGCCGTCCTGCAGGTTCAGACCGTGAC 19839 Query 27605 CACAGCTTGCGGGGTGAGCAAAGAGCAAGGGGATTTTGCCACTATTCCAGT 27655 | | ||| || || || || || | ||||| || || ||||||| Sbjct 19838 CGGCGGATGCTGGATGTGCGAACAGAACAGGGATCTTTCCGGCGTTCCAGT 19788 Score = 109 bits (120), Expect = 1e-19 Identities = 283/429 (66%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 2505 TATATGTGGACCGCCCTTGCGGGACGCGTGTTAAAGCCCGGTATTAAAGCGGATATGGTG 2564 |||||||||||||| || || || || ||| | | |||||| | || || || ||||| Sbjct 7599 TATATGTGGACCGCGCTGGCCGGGCGTGTGATGGAACCCGGTGTGAAGGCTGACATGGTT 7540 Query 2565 CCCATTTTGGTGGGTGCGCAAGGTTCTGGAAAATCGTCTGGC-GTGGCGGCGTTATCCCC 2623 || | |||| ||||| || || | || || || ||| || ||||| | | || Sbjct 7539 CCGGTGCTGGTCGGTGCTCAGGGCT-TGCGTAAGAGTACGGCAGTTGCGGCAATCGCACC 7481 Query 2624 TGATCCAACtttttttACTGAAATTTCCTTTGCTGAAAAAGATGATGATCTGGCACGTAA 2683 || | ||| || |||||| ||| | ||| ||||| |||||| |||| Sbjct 7480 GGACGTGAATTTCTTCTGTGAAATCAGCTTCGGTGACAAAGAAACCGATCTGTCACGCCG 7421 Query 2684 GATGCGGGGCTGTCTGGTGGCAGAAATTAGCGAATTACGCGGACTTAATACCAAAGAACT 2743 |||||| || ||||| | ||||| || ||| | || || | | ||| || Sbjct 7420 GATGCGCGGAAAGCTGGTCGGTGAAATCAGTGAACTGCGGGGGTTGATGACCCGCGAGGA 7361 Query 2744 GGAATCTATCAAAGCCTTTGTCACTCGGACACATGAAAAGTGGATCCCCAAGTTTAAAGA 2803 ||||| |||||||| || |||| || || ||||| | ||| | || ||||| || Sbjct 7360 AGAATCAATCAAAGCGTTCATCACCCGCACCCATGAGGAATGGGTTCCGAAGTTCCGTGA 7301 Query 2804 ATTCGCCACCCAATTTCCCAGACGCTCATTGAGTATTGGTACTACGAATGAAGATGAATT 2863 ||| ||| ||||| | || | | || || || || || ||| | | ||||| Sbjct 7300 GTTCCAGACCACGTTTCCGCGCCGGTTACTGTTCATCGGCACGACAAATAAGAACGAATT 7241 Query 2864 TTTAGGTGATAAAACCGGTAATCGGCGTTGGCTGCCCGTTGAAGTTGGAAAAATGGATGT 2923 | | | |||| |||||||| |||| || ||| |||| || || |||||| ||||||| Sbjct 7240 TCTGGCTGATGAAACCGGTCATCGTCGCTGGTTGCCGGTCACTGTCGGAAAAGTGGATGT 7181 Query 2924 AGAAGGTAT 2932 || |||| Sbjct 7180 TGACAGTAT 7172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 295/453 (65%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 28137 AAACCAGCGAGACGTAAACGCATTATGGGTTCTGCCTAAGCGCTCGCCCTGGTCAACAAA 28196 ||||||||| ||| || || |||| || | ||| | ||| | ||||| |||| ||| Sbjct 19309 AAACCAGCGCGACTGGAAAGCGTTATACGTCCGGCCAAGCCGCACACCCTGATCAAGAAA 19250 Query 28197 CCACGCTTGCCCCCATAAGTCCATCAGGCCATTAGGTGAAGGCGTACCGGTCAGATTTAC 28256 ||| ||||||||||| | ||| || ||| || ||||| || ||||||||||| | | Sbjct 19249 CCATGCTTGCCCCCACAGATCCTGCAAGCCGTTCGGTGACGGTGTACCGGTCAGTTCAAT 19190 Query 28257 CCAGCGATGAACAGATTTATGCGCTATTTTGGCAATTGCTGCGGTGCGTTTACCGCCTTT 28316 | || | || || ||| | | | | ||| | || ||||| |||| Sbjct 19189 GAATCGCCGCACCCTCTTGAACGCAACACTACCCAAAGCTTGCGCACGCTTACCACCTTG 19130 Query 28317 GCGTAACCGGAATGATTTCAACCGAGTGCTCTCATCGGCAATAATTGTGCCAAAAGGCCA 28376 || | |||||||| |||| | ||| ||||| |||| | | || || ||||| Sbjct 19129 CCGCAGGCGGAATGACTTCAGCTTTGTGGATTCATCAGCAACCACTTTGGTGAACGGCCA 19070 Query 28377 AGTGTCACC-AAGTATGTCAACCAGCCAGACGAGATTGTCATAATT--GACCGTAAAT-- 28431 ||| ||| |||| | || |||||||| || | || || || ||| || Sbjct 19069 CTTGTTACCTAAGTGT-TCTACCAGCCACGGTAGTTGTTCGTAGTTCGTGGTGTAGATGG 19011 Query 28432 ACGCTGGCATGGGTATTTTTGAGTGCCGCTATCCGTGCTTT-AGAGTTTCCAATGATGGG 28490 ||||||| | | | || || | ||| |||| || | | || | | || Sbjct 19010 TCGCTGGCCGGCG-------CAACGCTGCGAGTCGTTCTTTCAGCG-TACCGACCACCGG 18959 Query 28491 TTGTACTTCAATATTACGCAGGTGGCTCCATTTAAGCGCTTCATCTGGCCAGGTGGATTG 28550 ||||||||| || ||||||||| |||| ||| |||||||||| ||||||||| | Sbjct 18958 CGATACTTCAATGTTGCGCAGGTGGTTCCACTTACGCGCTTCATCCGGCCAGGTGCTTGA 18899 Query 28551 CGCTACCCGTAACGGGGCTAACACTAATGTCGG 28583 ||| || || | |||||| | ||| | ||||| Sbjct 18898 CGCAACGCGAAGCGGGGCAAGCACCAGCGTCGG 18866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127416531951574