Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11176 131 2e-25 seq18158 95.1 1e-14 >seq11176 Length=1573 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| || | ||| || || || |||||||| |||||| Sbjct 724 TCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGA 665 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || || |||||| |||||||||||| || || Sbjct 664 CAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 605 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| ||| | | ||||| || | ||||| || || | | ||| | Sbjct 604 AATGCCTTCCTTGTCT-TGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCA 546 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | ||||| || |||| ||| ||||||||||||||||| Sbjct 545 CTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCAT 497 >seq18158 Length=729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || |||||||||||| |||||| | Sbjct 361 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 420 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| |||||| | | || || ||||| | || | ||||| ||||| || Sbjct 421 TTAACATTCTCGATGGTGTCAGATGCT-TCCACTTCTAATGTGATTGTTTTACCGGTAAG 479 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| || ||||| Sbjct 480 AGTTTTAACAAAGATTTGCAT 500 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || ||||| | || | ||||||||||| ||||| || || || |||||| || Sbjct 9 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 68 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||| | | ||||| ||||| | | ||| ||||| | ||| | ||| ||||| Sbjct 69 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 128 Query 127088 GTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| |||||||||||||| |||||| Sbjct 129 GTCAATGTTTTTACAAAAATTTGCATG 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475358369679120