Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq11176 127 2e-24 seq4840 91.5 1e-13 >seq11176 Length=1573 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || || |||||||| |||||||| || |||||||||||| ||| | | || || | Sbjct 705 ACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCG--GACAATGTGCGACCGTCCT 648 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | |||| ||| ||||| || || ||||||||||| || |||| Sbjct 647 CCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTT 588 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| ||| ||||| ||| | || || |||| ||| |||||||| || | |||| Sbjct 587 GAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTT 528 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||| ||||||||||| ||||| Sbjct 527 TACCCGTCAAAGTCTTTACAAAAATCTGCAT 497 >seq4840 Length=3826 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | ||||| || ||||| || || || ||||||||||| || || ||||| | Sbjct 2414 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2473 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | || || || || ||||| || || |||| |||||| || |||| | Sbjct 2474 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2533 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| Sbjct 2534 GTTTTGACAAAAATTTGCAT 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451867808091480