Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq5 293 5e-75 >seq5 Length=40538 Score = 293 bits (324), Expect = 5e-75 Identities = 500/719 (70%), Gaps = 12/719 (2%) Strand=Plus/Minus Query 1871 TTTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGGCCATCAC 1930 ||||| ||||| ||||| | |||||| ||||| || || || || ||||| ||||| || Sbjct 20077 TTTCATTGCTTCAAGCAGAATGTCCTGAACTTCCCGCTTTGACTCGCGGCGTGCCATAAC 20018 Query 1931 CAATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCTGATGTCC 1990 | |||||| || || ||||| || || ||||| |||||||| || || || | |||||| Sbjct 20017 AAGTTCATCGACAGTACCCGCAGCAACAATGTGATGAATAAACACCGGTCGGTTATGTCC 19958 Query 1991 GGCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCTCCAGGTC 2050 |||||| || || || ||||| || || || || | || ||||| |||| || || | Sbjct 19957 GGCTTGAGCTTGTCGAGTCGGGCCGATACGCTCAACAATTTGCTGATACTCTTCAAGATT 19898 Query 2051 CCACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGCCATGACC 2110 ||||||||| ||||| | || | ||||| |||||||| ||||| || | || ||||| Sbjct 19897 CCACCAGTGACCGAATACTGCAAGGATATTGCCGCCGTCCTGCAGGTTCAGACCGTGACC 19838 Query 2111 GGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGCGGATCGT 2170 ||| || ||||| || || || || || || || || || ||||| |||||||| || Sbjct 19837 GGCGGATGCTGGATGTGCGAACAGAACAGGGATCTTTCCGGCGTTCCAGTCGCGGATAGT 19778 Query 2171 GTCGGGGTGTTTGTCCAAAGCACGCCCCTTGGGGAAGGCACGCTGCAACCGTGCGACATC 2230 | || | |||| ||| || || ||||| |||||| |||||| |||| || Sbjct 19777 CTGCGGATCAGAATCCAGGTGACGACCTTTCGGGAATGCACGCATCAACCGCGCGAGGTC 19718 Query 2231 ACTTTTAAAGTGATACGCCACCAACACCGGCATACCGGCGGCTTCTTCGATAATGTCGTG 2290 || || |||||||| |||| ||||||||||||||| |||||||| || | | Sbjct 19717 TGACTTGAAATGATACGCAACCAGCACCGGCATACCGGCAGCTTCTTCAATTACCGATTC 19658 Query 2291 CAGCGCCTCTAATTTCGCATCGTGCACGACTTCCCAGGCCTGACGTGTGTCATCGGTGTA 2350 ||| |||| | || || || || || | |||| | | || ||||| || Sbjct 19657 CAGTGCCTGCAGCTTTGCGTCATGTACTTCCGTCCAG---TTTCCTGATTCATCAACATA 19601 Query 2351 CAGCGCACCATTGGCCAGTTGCAGGCATTTAATTGTCTTGCTGGCGGCGTTAAAGGCTTC 2410 | || || || ||||| |||||||| || || || |||||||| || || ||||| Sbjct 19600 CGCAGCCCCGTTCGCCAGCTGCAGGCACTTGATCGTTTTGCTGGCAGCACCGAACGCTTC 19541 Query 2411 TACTTCA-GCACCGCATTCCAAGGCGATGAACATATCTTGTTCCATCGCCTTGTACAGAC 2469 |||||| | | || || ||| ||||||| ||| ||||||| || ||| | Sbjct 19540 GACTTCATGTTCATCAATC---TGCG-TGAACATTTCTCGTTCCATTTCCCGGTATATCT 19485 Query 2470 GTTGCGCATGTGCTGGCAACGCAACGCGAATCGTATTGACAATCGGCTGGCGTAAATCGA 2529 ||| || |||| |||| | ||||| ||| ||| |||||||||| | | || Sbjct 19484 GTTTTGCGCGTGCCGGCATTTCGACGCGGATCACATTCACAATCGGCTCATTGATGTTGA 19425 Query 2530 AGTACGCCTGTGGATCAAG--TGATAAACACAGGTCGCGTATCTTGTCTTGAATCTCTT 2586 | || || | | ||||| |||| ||| | |||||| | |||||| || |||| || Sbjct 19424 AATAATCCCGCGCGTCAAGGCTGAT--ACAGATGTCGCGCAGCTTGTCCTGTATCTGTT 19368 Score = 98.7 bits (108), Expect = 2e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 7428 GCCACACCGCCTCCAGCGAACGCCTCACCATCACGCAAGAACTGCACGCCACCCAGCGAA 7487 || ||||| || || | ||||| || || || | |||||| ||||| | ||| Sbjct 13968 GCAACACCACCACCGGAAAACGCTTCGCCGTCTTTGACGAACTGAACGCCGCGCAGACTG 13909 Query 7488 GCGTTAATCCGCTTGCCGTAGTTGTTGTCCTGCGCCCAGAGTTCTATGTTGGCGTTGACG 7547 |||||||| ||||| ||||| | || ||||||||||| ||||| ||| ||||||||||| Sbjct 13908 GCGTTAATACGCTTACCGTACTGATTATCCTGCGCCCACAGTTCAATGCTGGCGTTGACG 13849 Query 7548 TAGCATCCGGCATACGG 7564 ||||| ||||| || || Sbjct 13848 TAGCAACCGGCGTATGG 13832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117201839478216