Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19325 123 1e-22 seq11176 104 9e-17 seq12274 100 1e-15 seq19609 91.5 6e-13 seq4840 91.5 6e-13 >seq19325 Length=667 Score = 123 bits (136), Expect = 1e-22 Identities = 106/131 (81%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || ||||| || ||||| || || |||||| ||||||| ||||| ||||||||| Sbjct 6 GATGCTGTTATTACAGTCCCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGAT 65 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 | || ||||||||| |||||||||| || ||||| || ||||| |||||||||||| Sbjct 66 TCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCT 125 Query 451439 CTAGCATATGG 451449 | || ||||| Sbjct 126 ATTGCTTATGG 136 >seq11176 Length=1573 Score = 104 bits (114), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || |||| |||||||| || || || || || || | || Sbjct 496 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 555 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| ||| |||||||| |||||||| ||||| || ||||| Sbjct 556 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 615 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || || || || || || | || ||| | |||||||| Sbjct 616 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAA 675 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 |||| | ||||| | || || ||| Sbjct 676 TATTCAGAAGGAATCGACGCTGCAC 700 >seq12274 Length=1369 Score = 100 bits (110), Expect = 1e-15 Identities = 166/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| |||||||| || | | || | ||| Sbjct 1064 AATCCAGATGAAGCTGTGGCATATGGTGCAGCAGTTCAGGCTGGTGTTAT------TTCG 1117 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | || |||| || || ||| | || | ||||| | ||| || | ||||| || Sbjct 1118 GGCGAAGAAAGTACTGGTGACATTGTATTGTTGGATGTGAATCCTTTAACCCTTGGTATT 1177 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168 |||||| |||||| | ||||| || | ||| || |||| ||| ||||||| | Sbjct 1178 GAAACAATTGGTGGTGTTATGACCAAACTCATTCAA--AGGAACACTGTTATTCCTACCA 1235 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 | |||||||| | || ||||||| ||||||||| ||| || |||||||| || Sbjct 1236 AGAAGAGTCAGATCTTCTCTACAGCAGCTGATAACCAGCCAACAGTCACTATTCAGGT 1293 >seq19609 Length=654 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 493 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 436 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 435 GTCCCACAGAGGGC 422 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 493 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 436 Query 511715 ATCCCACATAAGGC 511728 ||||||| | ||| Sbjct 435 GTCCCACAGAGGGC 422 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 493 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 436 Query 510801 ATCCCACATAAGGC 510814 ||||||| | ||| Sbjct 435 GTCCCACAGAGGGC 422 >seq4840 Length=3826 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 2553 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCA 2494 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| ||||| || || || ||||| || ||||| ||||| Sbjct 2493 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAG 2434 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || || || ||||| |||| Sbjct 2433 CAGCGGTTGATTTTTGCAGG 2414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975111803206004