Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq19325 136 3e-26 seq20998 113 3e-19 seq15663 107 1e-17 seq15823 104 2e-16 seq2104 86.0 5e-11 >seq19325 Length=667 Score = 136 bits (150), Expect = 3e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 518165 tttttATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| |||||| || |||||||| || ||||| | | |||| Sbjct 148 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 89 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||||||| || | ||||||||||||||||| ||||||||| ||||| ||| Sbjct 88 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTAT 29 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || || |||||||| ||||| Sbjct 28 GCGGGGACTGTAATAACAGCATC 6 >seq20998 Length=594 Score = 113 bits (124), Expect = 3e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| ||||||| ||||| |||||| |||||| |||||||||||| ||||| ||| || Sbjct 221 AAAACAGTATTGTGCGGATTCATTGCAACTTGATTTTTGGCTGCATCGCCAATAAGACGT 162 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || || || ||||||| |||||| ||||| ||||| ||||||||| Sbjct 161 TCAGTATCGGTAAATGCAACATACGATGGTGTTGTACGATTACCT 117 >seq15663 Length=922 Score = 107 bits (118), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||| | ||| |||||| ||| ||| || || || | |||| ||||| | Sbjct 92 AAAGGCCAATGTTTGATATCTTGTTGTACAGTTGAATCCTTGTACTCTCGGCCAATCAGA 151 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 ||||| ||||||||| |||||| ||||| ||| |||| |||||||||||| Sbjct 152 CGTTTAACATCAAAAACAGTATTTTCCGGATTTGTTGTTAACTGATTTTTGGCTGCATCA 211 Query 518573 CCAATCAGATGTT-----CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 ||||| ||| | | || || | || |||| || |||||||| || | |||||| Sbjct 212 CCAATAAGACGCTCACCGCTTTCACCAGTGAATGCTACGTATGATGGCGTGATCCGATTA 271 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || || ||||| ||||||||||| ||| ||||||| | || || ||||| || Sbjct 272 CCCTGTTCATTTGCAATAATTTCCACTCGTCCATTTTTATAGACTCCAACACAGCT 327 >seq15823 Length=906 Score = 104 bits (114), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 218 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 159 Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293 |||| ||| |||||||| ||||| ||||| |||||||| ||||| || | ||| Sbjct 158 TTGTTTGCCTGTGGATTTATCCTGGGCAGAAACATTCAGAATACCGTTGGCGTCAATATC 99 Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 98 AAACGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 39 Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAA 517383 | | || || ||||| |||||||| || Sbjct 38 TTTACCAAGCAAGTTATTGTCTTTAGTCAA 9 >seq2104 Length=6899 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 200573 TTCATTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 200632 ||| |||| |||||| |||||||||||||| | |||||| ||||||||| | | | | Sbjct 4418 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 4359 Query 200633 TCCTAATGTTTTCTTGATCATGGCTGAACATTCAATATGCCAACCAGGTACACCAAA 200689 || | ||||| |||| |||||||| || ||||||||||||||| ||| || Sbjct 4358 ACCACAGATTTTCGAACTCATTGCTGAACACTCGATATGCCAACCAGGTCTACCTAA 4302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779633277005878