Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq9234 421 2e-113 seq17740 251 2e-62 seq9729 170 5e-38 seq15326 150 5e-32 >seq9234 Length=2011 Score = 421 bits (466), Expect = 2e-113 Identities = 1062/1598 (66%), Gaps = 24/1598 (2%) Strand=Plus/Minus Query 28554 CGATAAATGGAAAGACGCGACGCCGATCGAGCGCATCGAGGCGGCGGCCGAAACGCGCCT 28613 ||| |||||| | |||||| |||| |||| ||| || | | ||| || | | || Sbjct 1738 CGACAAATGGGATGACGCGCAGCCGCTCGATCGCGTCAATGGCGCGCTTGAGGTGAGGCT 1679 Query 28614 GATGGTCCTGATTGCGAAGGACAAGAAGGACGGCGCGGACTACAAGGAAATCGACCTGCT 28673 ||| ||||| |||| ||||| ||||| ||||||||||| || ||||| || Sbjct 1678 GATCCAGCTGATCCTGAAGACGGAGAAGACCGGCGGCGACTACAAGGAGATTGACCTTCT 1619 Query 28674 CGGCCGACAGATCGAGCGGCTCGCGCGCGTGCAGAAATACGGGGAGACGGGGAAGGAAGG 28733 || || ||| | ||||| |||||||| |||| ||| | |||| ||| ||||| Sbjct 1618 GGGGCGGCAGCTGGAGCGCACGGCGCGCGTCGAGAAGTACCAGCAGACCGGGCGCGAAGG 1559 Query 28734 CGACCTGAACCCGAACATTGCCGCGCGCAATGCCGGGCCGAAGCGCAAGCCGCCGAAAAA 28793 ||| |||| |||||||| || ||||||||||||| ||||||||||||||| | || Sbjct 1558 GGACTTGAATCCGAACATCGCGGCGCGCAATGCCGCGCCGAAGCGCAAGCCCAAGCGCAA 1499 Query 28794 CGAAATCAGCGAGGAACAGGAAGAGCGGATCGTGAAGGCGTTCCGCGAATCACTGTTCGA 28853 |||| |||||| || ||| | || | | | | | | ||||| || ||| Sbjct 1498 CGAACTCAGCGCCGACCAGATCGCGCTGCTGGAAACCAAGCTGCGCGAGTCGAACTTCCC 1439 Query 28854 CTACCAGAAGGTCTGGTATCGAAACGGCG-ATCAGCAGACGCGCAATATCCTGAAGTCAC 28912 | ||| || ||||| |||| | | | |||| |||| |||||||| | | Sbjct 1438 TTTCCATCAGAACTGGT-TCGATCAGCAGTACCAGCGCCTGCGCGCCATCCTGAAAGCGC 1380 Query 28913 GGCAGATCGGCGCCACCTGGTATTTCGCACGCGAGGCATTCGTCGACGCGCTCGATACCG 28972 |||||||||| || |||| || || | |||||||| | || || | ||| | | Sbjct 1379 GGCAGATCGGTGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCTCGGC-CGCGAAAGAG 1321 Query 28973 GC-CGCAACCAGATTTTTCTATCGGCCAGCAAAGCACAGGCGCACGTCTTCAAACAG-TA 29030 | |||||| || |||| | ||||| || || ||||| ||| ||| ||| || Sbjct 1320 GGGCGCAACAAGCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCAGTTCCG-CAGCTA 1262 Query 29031 CATCGTGCAGTTCGCTCGTGACGTGGCCGACGTTGAGCTGACGGGCGATCCGATCATTCT 29090 |||||| | ||||| || || |||||| || |||| |||||| |||| || Sbjct 1261 CATCGTCGACTTCGCGAAAGAGGT---CGACGTCGACCTGAAGGGCGAGAACATCAAGCT 1205 Query 29091 GCCGAACGGTGCGACGCTGTACTTCCTAGGGACGAACTCGCGCACCGCGCAGTCGTATCA 29150 | |||||| || |||| |||||| || || ||| | || || ||| ||||| Sbjct 1204 GTGGAACGGCGCCGAGCTGATCTTCCTTGGCACCAACGCCATGACGGCCCAGAGCTATCA 1145 Query 29151 CGGCAATCTGTACTTCGACGAATATTTCTGGGTGCCGAAGTTCCGCGAGCTGAATACCGT 29210 |||| | | |||||||| |||| ||| ||||| || ||| | || | || | | Sbjct 1144 CGGCGACTTCTACTTCGATGAATTTTTTTGGGTCCCACGCTTCAGGCAGATCAACAAGCT 1085 Query 29211 TGCGTCGGGCATGGCGATGCACAAACGCTGGCGGCTGACCTACTTCAGCACGCCGTCGAG 29270 || | ||||| |||||| | |||||| |||||| ||| ||||| ||| Sbjct 1084 GGCCAGTGCGATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGACGCCCTCGGC 1025 Query 29271 TACGACCCATGAAGCCTACGCGTTCTGGAGCGGCGCCGATGCGAATCGTGGGCGCGCGCC 29330 | | | || || |||| || |||||||| ||||| ||| ||| || |||||| Sbjct 1024 GATGTCGCACGAGGCCTTCGGGTTCTGGACCGGCGACGACCGGAACAAGGGCCGCGCGAA 965 Query 29331 TAGCGATCGTATCCAGATCGACACGAGCCACGAAGCGCTCGTGCGA-GGCATGCTGGGCG 29389 | || | ||| |||||||| |||||| | ||| | ||| |||||||||||| Sbjct 964 AAAGGACCACGTCCGCATCGACACCAGCCACAAGATGCT-GCGCGGCGGCATGCTGGGCC 906 Query 29390 AGGACGAGCAGTGGCGTCAGATCGTCACCGTACTCGATGCGATCGAGGGCGGCTGCGACT 29449 || | ||||| | |||||||| || || || ||| | |||| ||| Sbjct 905 TCGATCGCAAATGGCGCGACATCGTCACGGTGGAAGACGCCGTCGCGATGGGCTTCGATC 846 Query 29450 TGTTCGACCTGGA-GAGACTTCGGCGCCGG-TACAGTGCAGAGGCTTTCGCGAACCTGCT 29507 ||||||| | | ||| || || || | ||||| || | |||||||||||| | Sbjct 845 TGTTCGATATCGCCGAG-CTGCG-CGAGGAATACAGCCTCGACGAGTTCGCGAACCTGTT 788 Query 29508 GATGTGCCAGTTCATCGACGATTCGGTGTCGGTGTTCAAGCTGGCCGAGCTGCAGCGCTG 29567 |||||||||||||||||||| ||||| |||||| |||||| || ||||| || Sbjct 787 CATGTGCCAGTTCATCGACGACAGCTTGTCGCTGTTCACGCTGGCGCAGATGCAGGCTTG 728 Query 29568 CATGGTCGACTCGTGGGAGGAATGGGCCGACGACTTCTCGCNNNNNNNNNNNCGTCCGTT 29627 |||| ||||| |||||| ||| | | |||| || || || || | Sbjct 727 CATGATCGACAGCTGGGAG--ATGTGGAG-CGACGTCAAGCCGCTTTGGATTCGGCCCTA 671 Query 29628 CG---GCTATCGCGAGGTGTGGGTTGGCTACGATCCGGCGCTGACTGGCGACTCAGCCGG 29684 || || || ||||||||| |||||||| || | | ||||| | || | Sbjct 670 CGCTCACTTTC---CGGTGTGGGTCGGCTACGACCCATCAGACAAGGGCGATGCCGCTGC 614 Query 29685 TCTCGTTGTCGTGGCGCCGCCGCGTGTCGAGGGTGGGACGTTCCGCGTGCTCGAACGTCA 29744 || || || || ||||||||||| || || || | ||||||| | || | || | Sbjct 613 ACTGGTGGTGGTCGCGCCGCCGCGCGTGCCAGGCGGCAAGTTCCGCATCCTACATCGCGA 554 Query 29745 CCAGTTCCGCGGCAACGACTTCGAGGAACAGGCCGCGGCGATCGAACAGATCACGCAGCG 29804 |||||| ||| |||||||||| ||||||| ||| ||| | |||||| |||| Sbjct 553 GCAGTTCAAGGGCTCGGACTTCGAGGCGCAGGCCGAGGCCATCCGTCGGATCACCCAGCA 494 Query 29805 CTACAACGTCGGCTATATCGCGATCGACACGACGGGCATGGGGCAGGGCGTCTATCAGCT 29864 |||||||||| |||||| ||||||| ||| ||| |||| ||||| | ||| | Sbjct 493 ATACAACGTCGTGCATATCGGCATCGACAAGACCGGCCTGGGTGCTGGCGTGTTCCAGAT 434 Query 29865 CGTGCGGAAGTTCTACCCGGCGGCCGTTGCATTGAACTACTCGCCCGAGGTCAAAACTCG 29924 ||| |||||||| || || | | | ||| |||||| || || Sbjct 433 CGTCGAGAAGTTCTTTCCCCAGGTGAAGGGCTACCAGTACAGCATCGAGGTGAAGCAGCG 374 Query 29925 CCTTGTGCTGAAGGGGCAATCCGTCATCCGCAACGGCCGCCTGCAATTCGACGCGGGATG 29984 ||| |||||||||| |||| ||||||| ||| || || ||| | ||||| || ||||| Sbjct 373 CCTGGTGCTGAAGGCGCAACAGGTCATCCACAAGGGGCGACTGGAGTTCGATGCTGGATG 314 Query 29985 GACCGACCTGGCCGCGGCGTTCATGGGAATCAAACAGACCATGACGGCGAGCGGCCGCCA 30044 ||||||| | |||||||| ||||||| ||||| | | || || |||||||| | Sbjct 313 GACCGACATCGCCGCGGCCTTCATGGCCATCAAGCGCGTGCTCACCGCCAGCGGCCGAAA 254 Query 30045 CGCAACGTACACCGCCGACCGCAACGAAGAGACGGGCCACGCCGACCTGGCATGGGCCTG 30104 | || ||| | | | |||| ||||| ||||| ||||| || || || ||||| Sbjct 253 CATGACCTACGACTCGGGCCGCTCCGAAGTCACGGGACACGCGGATCTTGCGTGGGCAAC 194 Query 30105 CCTGCACGCGATCGACCGCGAACCGCTCGCCGGCGGCG 30142 |||||||| ||||| |||| | |||||||||| || Sbjct 193 GATGCACGCGCTCGACAACGAATCACTCGCCGGCGACG 156 >seq17740 Length=755 Score = 251 bits (278), Expect = 2e-62 Identities = 521/753 (69%), Gaps = 23/753 (3%) Strand=Plus/Plus Query 30266 CTTCACCTTCGACGATCCCACGCCGGTCATGAACCGCGCCGAGATTCTCGACTACGTCGA 30325 ||||| ||||| ||| || ||| |||| ||| | || | || ||||||||||| Sbjct 1 CTTCAGCTTCGGCGACCCGGAGCCTGTCAG---CCGTATCCAGCTGCTGGACTACGTCGA 57 Query 30326 ATGCTGGTCGAACGG-CGATTGGTTCGAGCCGCCCGTCAGCTTCGCCGGCCTGGCGAAAT 30384 | || || ||||| |||| ||| |||||||| | | | || |||||| Sbjct 58 AAGCATGTTCAACGGTCGAT-GGTATGAGCCGCCGCTGCCGTGGGATGGATTGGCGAGCG 116 Query 30385 CGTTCCGCGC-TAGCACGCACCACAGCTCCGCGCTGTACTTCAAGGCGAACGTGCTGGCG 30443 |||||||||| | || ||||||| |||| ||| | | | | ||| ||| |||| | Sbjct 117 CGTTCCGCGCGTCGC-CGCACCATGGCTCTGCGATCTTCCTGAAGCGCAACCTGCTCAAG 175 Query 30444 TCGACGTTCCGGCCTCACAGGTGGCTATCCCGGCATGCGTTCGAG-CGATGGGCGCTCGA 30502 ||| |||| || || | |||| || | |||| | | | |||| |||| || Sbjct 176 GCGATGTTCGTCCCCCATCCGCGGCTGTCGAGCGCGACGTTTGGGGCCATGG-CGCTGGA 234 Query 30503 CTTCCTGACGTTCGGCAACGGCTACCTGGAAC-GCCGC-CGCAATCAGCTCGGCGACACG 30560 |||||| |||||||| | |||| | || | ||||| |||| ||| | |||| | || Sbjct 235 CTTCCTCGTTTTCGGCAATGCCTACGTCGAGCAGCCGCGCGCATTCA-CGGGGCGCC-CG 292 Query 30561 CTGCGGCTCGAACCGGCCCTGGCCAAATACACGCGGCGCAAGGCCGATTTCAGTGGCTTT 30620 ||| ||| | | || |||||||| |||||||| ||| | || | | | | Sbjct 293 CTGGAGCTGCAGCACGCGCTGGCCAAGTACACGCGCCGCGGGCAGGAGCCGGGCCGGTAT 352 Query 30621 GTGTACGTGAACGGCTGGCAGGACAAGCACGAGTT-CGAGCCGGGCAGCGTGTTCCAGCT 30679 | | |||| |||||||| | | |||||||||| | |||||| || ||||||| || Sbjct 353 TTCTTCGTGCGCGGCTGGCTGCAGGAGCACGAGTTTCCAGCCGGCTCGC-TGTTCCACCT 411 Query 30680 CATGCGACCG-GACATCAACCAGGAGGTGTACGGCCTGCCCGAATATCTCAGCTCGCTTC 30738 |||| ||| |||| || ||| | ||||| ||||||| || ||||| |||| | Sbjct 412 TC-GCGAGGATGACGTCAATCAAGAGATCTACGGTTTGCCCGAGTACATCAGCGCGCTGC 470 Query 30739 ACTCGGCCTGGCTGAACGAGTCGTCGACGCTGTTCCGGCGGAAGTATTACGAAAACGGTA 30798 | ||||||||||| |||||| | | || |||||||||||||||| |||| ||||| Sbjct 471 AGTCGGCCTGGCTCAACGAGGCAGCCACCATGTTCCGGCGGAAGTACTACGCCAACGGGT 530 Query 30799 GCCACGCCGGCTTCATCCTCTACATGACCGACGCGGCGCAGA--AGCA-GGAGGATGTCG 30855 ||||||||||||||||||||| || | ||||| ||| |||| || || | | Sbjct 531 CGCACGCCGGCTTCATCCTCTACCTGTCGGACGCC---CAGGTCAGCACGGCCGACGCGG 587 Query 30856 ACAACATGCGCACGGCGTTGAAGAACGCGAAGGGGCCGGGCAATTTCCGCAACGTGTTCA 30915 | | ||| |||| ||||| || ||||| |||||||| ||||||||| ||||| Sbjct 588 ATGCACTACGCGAGGCGCTGAAGGGGGCCAAGGGACCGGGCAACTTCCGCAACCTGTTCC 647 Query 30916 TGTACGCGCCGGGCGGGAAAAAGGACGGTATCCAGCTCATCCCAGTGTCCGAGGTCGCGG 30975 || |||| |||||||| || || || | |||| || || || ||||||||||||| Sbjct 648 TGCACGCCCCGGGCGGCAAGGCCGAGGGCCTAAAGCTGATTCCGGTCTCCGAGGTCGCGG 707 Query 30976 CGAAGGACGAGTTCTTCAACATCAAGAACGTGA 31008 | |||||||| ||| |||||| ||||||| Sbjct 708 CCAAGGACGACTTCGCGGCCATCAAAAACGTGA 740 >seq9729 Length=1888 Score = 170 bits (188), Expect = 5e-38 Identities = 483/729 (66%), Gaps = 25/729 (3%) Strand=Plus/Plus Query 11534 GATGCCGTATGCGCCGCGATTGAGCTTTTCATTCTTGTGAATCTGGTCCCGCTGCATGTA 11593 |||||| | || ||| || ||||| | |||||||| |||||||| ||||||| ||| Sbjct 299 GATGCCATCAGCACCGGCGTTTAGCTTCGCGTTCTTGTGGATCTGGTCGCGCTGCAGGTA 358 Query 11594 CATGGTCGTGAACAGATTCGATGCAGTCCGGTTGGTAAAGATCGTCGAAATCATGTCTTT 11653 ||| | ||||||||||| ||||| |||||| ||||||| | ||| |||| Sbjct 359 CATCTGGGCAAACAGATTCGACGCAGTGCGGTTGCTAAAGATGCTGCCGATCGTGTCGAG 418 Query 11654 CACCTTGTCCGGATCGGTGATCCCCTTCGCGGCCAGCTTCGGGAGAAACACCTTTTCCAG 11713 || | ||| || ||||| ||||| || || |||| |||| ||||| Sbjct 419 GACTTGCTCCTTTTCAGTGATGCCCTTTTGTTTCAAAGCAGGTAGAAGAACCTGTTCCAT 478 Query 11714 CCATTCGAGCGGAGACGCCTTGAACAGATCGCCGCCAGTGAGCGCGCCGGGCTTGATTTC 11773 |||||||| | | | ||| || |||| || |||||||||| || || | Sbjct 479 CCATTCGAACTGGTTGGTTCGGAATAGCTCGCTCCCCTTGAGCGCGCCAGGGTTCAGAAA 538 Query 11774 CTTGATCGTGCCGA---TTTTCGTGTCGACGACCTTTTTTCTGTC---GAGCAGACCGAG 11827 | | | || | | || || || |||| | ||| ||| || || || || Sbjct 539 CGCCAAC-TGACCAGCCTTGTCATG-CGAC-AGCTTCGACGGGTCTCCGATCAACCCCAG 595 Query 11828 CGCGATCATCTGGTTCGCCGCACGCTTCGTTGTCTTGCCCTGGTACGCGTTGCTGTATGC 11887 ||| || | || || || || || || ||||| || ||||| ||| |||||| Sbjct 596 CGCCTCGATGTTCTTGGCTGCTCGTTTGGTGGTCTTTCCTTGGTAGAGGTTCTGGTATGC 655 Query 11888 GGACATGAGGCCAGTGCCGACGCCGTGGCCGCCCATTTC-CTGAATCAGCGGTTCCATTT 11946 ||||||| | | ||||| || | || |||||||| || |||| | || | || | || Sbjct 656 GGACATGGTGGCGGTGCCAACTCGGTTCCCGCCCATCTCGCTGA-TGAGTGCCTCGAGTT 714 Query 11947 GGTAATAGAACGC---GTCCT---GGCGCATCTGCTTCGCGGCGACGCCGCCGGTCTGGA 12000 |||| || | || ||| | ||| || || || || ||||| || || | || Sbjct 715 GGTAGTACATGGCCGAGTCGTTAAGGC----CT--TTTGCAGCTACGCCACCAGTTTTGA 768 Query 12001 TGAAGTTGCGCCACTCGTCGCCTCCGACACGGCCGCCGGTTGCGGACAGCACTTTCTGCA 12060 |||||||| |||| || || ||||| || ||||| || || | | || ||||| Sbjct 769 TGAAGTTGAGCCATTCTTCCGGGCCGACCCGCCCGCCCGTCGCCGTGATGACCCGCTGCA 828 Query 12061 CCATGTTCGCTTCGTTCTTGAACGTCGCTTCGTCTTTCGTGCC-GCCGCGCAGCTCGATC 12119 |||||| ||| | | |||| ||| ||| || | ||| ||||||||| ||||| Sbjct 829 CCATGTCCGCCTGATCGGTGAAGGTCTTTTCA-CTGGCAAGCCCGCCGCGCAGTTCGATG 887 Query 12120 ACCTTCAGCATGTTCATGAACTTCTCTTCGTTCGCGTGGGCGTCCTCCGCGCCGAACAGT 12179 || |||||||| | |||||| |||||| | | || ||| |||| |||| | Sbjct 888 ACGCGCAGCATGTCGAGAAACTTCCGTTCGTTGTCTTTCCCGCTCTCTTCGCCAAACATT 947 Query 12180 GCTTCGTTCGCGAACTTCATTTTTGCGAGCGTCGGCATCACCATCTGCGCGTGATGCTCG 12239 || ||| || || ||||| || ||||| || ||||||||||||| ||||||||| || Sbjct 948 GCAGTGTTGGCAAATTTCATCTTGGCGAGGGTGGGCATCACCATCTCGGCGTGATGCACG 1007 Query 12240 TCCGCGAAG 12248 || || ||| Sbjct 1008 TCGGCAAAG 1016 >seq15326 Length=957 Score = 150 bits (166), Expect = 5e-32 Identities = 187/254 (74%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 27833 GCCGCGAATTGCAGTGCTTCGGTGCCGAGGCTCGCCGGGTCGTCGGTCGCGGCCAGGCCG 27892 |||||||| ||||| ||| ||||||||||| || |||| |||||| ||||||||||| Sbjct 318 GCCGCGAACTGCAGCATTTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCG 259 Query 27893 ACCAGATACGCTTCGCCGATGTCGGCGAAGTCGGGATTGACTTCGATCGACGTGAAAACC 27952 | |||||| || | | || |||||||||| | || ||||||| ||| || | | | Sbjct 258 ATCAGATAGGCCTTGTCGGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATC 199 Query 27953 TTCTGGCGCTTCTTCGACAGCGCGACCAGCTCGTCGGTCGGATCGAGCTGCGCGTACAGC 28012 |||||||||||||| | ||||| ||| |||||||| ||| || |||||| || || Sbjct 198 TTCTGGCGCTTCTTGTTGATCGCGATCAGTTCGTCGGTGGGAGAGATCTGCGCATAGAGG 139 Query 28013 CCCATCTTGCCTTTCAGCGGGCCGTCTTCGATCTCGGATGCCTTCAGCGCGATCACATCG 28072 | | ||| ||| || |||| |||| ||| | ||| | ||| | ||| ||| Sbjct 138 GCGAGCTT--CTTGGCGC-CGCCGATCTCGACCTCTTCGGTCTTGACCGCCAGCACGTCG 82 Query 28073 CCATACGCGCCGAA 28086 |||||||||||||| Sbjct 81 CCATACGCGCCGAA 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129617505462902